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(-) Description

Title :  CRYSTAL STRUCTURE OF THE N-TERMINAL BTB DOMAIN OF HUMAN KCTD10
 
Authors :  D. M. Pinkas, C. E. Sanvitale, N. Solcan, S. Goubin, C. Tallant, J. A. New J. Kopec, F. Fitzpatrick, R. Talon, P. Collins, T. Krojer, F. Von Delf C. H. Arrowsmith, A. M. Edwards, C. Bountra, A. Bullock
Date :  12 Jan 16  (Deposition) - 17 Feb 16  (Release) - 17 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.64
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. M. Pinkas, C. E. Sanvitale, N. Solcan, S. Goubin, C. Tallant, J. A. Newman, J. Kopec, F. Fitzpatrick, R. Talon, P. Collins, T. Krojer F. Von Delft, C. H. Arrowsmith, A. M. Edwards, C. Bountra, A. Bullock
Crystal Structure Of The N-Terminal Btb Domain Of Human Kctd10
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN 3
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Fragment: BTB DOMAIN, UNP RESIDUES 26-135
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HBACURD3, BTB/POZ DOMAIN-CONTAINING PROTEIN KCTD10, POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING PROTEIN 10, KCTD10

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1HG4Ligand/IonMERCURY (II) ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:80BINDING SITE FOR RESIDUE HG A1131
2AC2SOFTWAREASN A:89 , CYS B:80BINDING SITE FOR RESIDUE HG B1131
3AC3SOFTWAREASP B:93 , CYS C:80BINDING SITE FOR RESIDUE HG C1129
4AC4SOFTWAREASN C:89 , CYS D:80BINDING SITE FOR RESIDUE HG D1131

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FTA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5FTA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FTA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FTA)

(-) Exons   (0, 0)

(no "Exon" information available for 5FTA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:101
                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeeeeehhhhh...hhhhhhhh.....ee.....eee.....hhhhhhhhhhhh......hhhhhhhhhhhhhhh.hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
                 5fta A  30 SSKYVKLNVGGALYYTTMQTLTKQDTMLKAMLSGRMEVLTDSEGWILIDRCGKHFGTILNYLRDGAVPLPESRREIEELLAEAKYYLVQGLVEECQAALQN 130
                                    39        49        59        69        79        89        99       109       119       129 


Chain B from PDB  Type:PROTEIN  Length:101
                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeeeeehhhhh...hhhhhhhh............eee.....hhhhhhhhhhhh......hhhhhhhhhhhhhhh.hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
                 5fta B  30 SSKYVKLNVGGALYYTTMQTLTKQDTMLKAMLSGRMEVLTDSEGWILIDRCGKHFGTILNYLRDGAVPLPESRREIEELLAEAKYYLVQGLVEECQAALQN 130
                                    39        49        59        69        79        89        99       109       119       129 


Chain C from PDB  Type:PROTEIN  Length:97
                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..eeeeeehhhhh...hhhhhhhh............eee.....hhhhhhhhhhhh......hhhhhhhhhhhhhhh.hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------- Transcript
                 5fta C  32 KYVKLNVGGALYYTTMQTLTKQDTMLKAMLSGRMEVLTDSEGWILIDRCGKHFGTILNYLRDGAVPLPESRREIEELLAEAKYYLVQGLVEECQAAL 128
                                    41        51        61        71        81        91       101       111       121       


Chain D from PDB  Type:PROTEIN  Length:99
                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..eeeeeehhhhh...hhhhhhhh............eee.....hhhhhhhhhhhh......hhhhhhhhhhhhhhh.hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 5fta D  32 KYVKLNVGGALYYTTMQTLTKQDTMLKAMLSGRMEVLTDSEGWILIDRCGKHFGTILNYLRDGAVPLPESRREIEELLAEAKYYLVQGLVEECQAALQN 130
                                    41        51        61        71        81        91       101       111       121
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FTA)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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