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(-) Description

Title :  CRYSTAL STRUCTURE OF UDP-3-O-[3-HYDROXYMYRISTOYL] N-ACETYLGLUCOSAMINE DEACETYLASE (LPXC) FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH CHIR-090 INHIBITOR
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  22 May 17  (Deposition) - 07 Jun 17  (Release) - 07 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Inhibitor, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Lpxc, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. L. Delker, S. J. Mayclin, J. N. Phan, J. Abendroth, D. Lorimer, T. E. Edwards
Crystal Structure Of Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase (Lpxc) From Pseudomonas Aeruginosa In Complex With Chir-090 Inhibitor
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE
    Chains: A
    EC Number: 3.5.1.108
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSAEA.00166.A.DG15
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: LPXC, ENVA, PA4406
    Organism Scientific: PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
    Organism Taxid: 208964
    Strain: ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1
    Synonym: UDP-3-O-ACYL-GLCNAC DEACETYLASE,UDP-3-O-[R-3- HYDROXYMYRISTOYL]-N-ACETYLGLUCOSAMINE DEACETYLASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 7)

Asymmetric/Biological Unit (5, 7)
No.NameCountTypeFull Name
1C901Ligand/IonN-{(1S,2R)-2-HYDROXY-1-[(HYDROXYAMINO)CARBONYL]PROPYL}-4-{[4-(MORPHOLIN-4-YLMETHYL)PHENYL]ETHYNYL}BENZAMIDE
2CA1Ligand/IonCALCIUM ION
3CL1Ligand/IonCHLORIDE ION
4EDO3Ligand/Ion1,2-ETHANEDIOL
5ZN1Ligand/IonZINC ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREMET A:62 , GLU A:77 , HIS A:78 , THR A:190 , PHE A:191 , ILE A:197 , GLY A:209 , SER A:210 , VAL A:216 , HIS A:237 , LYS A:238 , ASP A:241 , HIS A:264 , ZN A:402 , HOH A:761binding site for residue C90 A 401
2AC2SOFTWAREHIS A:78 , HIS A:237 , ASP A:241 , C90 A:401binding site for residue ZN A 402
3AC3SOFTWAREGLY A:263 , LEU A:266binding site for residue CL A 403
4AC4SOFTWAREGLU A:59 , THR A:61 , EDO A:406 , HOH A:591 , HOH A:662binding site for residue CA A 404
5AC5SOFTWAREGLY A:108 , VAL A:111 , PHE A:112 , SER A:186 , ARG A:272 , THR A:273 , HOH A:647binding site for residue EDO A 405
6AC6SOFTWAREGLU A:59 , THR A:61 , MET A:62 , SER A:63 , CA A:404 , HOH A:575binding site for residue EDO A 406
7AC7SOFTWAREGLU A:138 , GLY A:140 , LEU A:228 , GLU A:231 , HOH A:561 , HOH A:570binding site for residue EDO A 407

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5VWM)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Asp A:45 -Pro A:46

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5VWM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5VWM)

(-) Exons   (0, 0)

(no "Exon" information available for 5VWM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:300
                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeee...eeeeee......eeeeeee.......eeeee......eeee.hhh.eee.....eeee..eeee.hhhhhhhhhhhh...eeeee...........hhhhhhhhhhhheeeeeee..eeee...eeeee..eeeeee....eeeeee.............eeeee....hhhhhh.....eee..hhhhhhhh...........eee..............hhhhhhhhhhhhhhhhhhh.eeeeeeeee..hhhhhhhhhhhhhhh...eeee...hhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5vwm A   0 SMIKQRTLKNIIRATGVGLHSGEKVYLTLKPAPVDTGIVFCRTDLDPVVEIPARAENVGETTMSTTLVKGDVKVDTVEHLLSAMAGLGIDNAYVELSASEVPIMDGSAGPFVFLIQSAGLQEQEAAKKFIRIKREVSVEEGDKRAVFVPFDGFKVSFEIDFDHPVFRGRTQQASVDFSSTSFVKEVSRARTFGFMRDIEYLRSQNLALGGSVENAIVVDENRVLNEDGLRYEDEFVKHKILDAIGDLYLLGNSLIGEFRGFKSGHALNNQLLRTLIADKDAWEVVTFEDARTAPISYMRP 299
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5VWM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5VWM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5VWM)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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    Asp A:45 - Pro A:46   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LPXC_PSEAE | P47205: 2ves 3p3e 3u1y 3uhm 4fw3 4fw4 4fw5 4fw6 4fw7 4j3d 4lcf 4lcg 4lch 4okg 5drq 5drr 5n8c 5u39 5u3b 5upg

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5VWM)