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(-) Description

Title :  STRUCTURE OF DCN4 PONY DOMAIN BOUND TO CUL1 WHB
 
Authors :  R. K. Guy, B. A. Schulman, D. C. Scott, J. T. Hammill
Date :  21 Mar 17  (Deposition) - 24 May 17  (Release) - 21 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym. Unit :  A,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  C  (1x)
Keywords :  E3 Ligase, Ligase - Protein Binding Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. C. Scott, J. T. Hammill, J. Min, D. Y. Rhee, M. Connelly, V. O. Sviderskiy, D. Bhasin, Y. Chen, S. S. Ong, S. C. Chai, A. N. Goktug, G. Huang, J. K. Monda, J. Low, H. S. Kim, J. A. Paulo, J. R. Cannon, A. A. Shelat, T. Chen, I. R. Kelsall, A. F. Alpi, V. Pagala, X. Wang, J. Peng, B. Singh, J. W. Harper, B. A. Schulman, R. K. Guy
Blocking An N-Terminal Acetylation-Dependent Protein Interaction Inhibits An E3 Ligase.
Nat. Chem. Biol. 2017
PubMed-ID: 28581483  |  Reference-DOI: 10.1038/NCHEMBIO.2386

(-) Compounds

Molecule 1 - DCN1-LIKE PROTEIN 4
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 102-292
    Gene: DCUN1D4, KIAA0276
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DCUN1 DOMAIN-CONTAINING PROTEIN 4,DEFECTIVE IN CULLIN NEDDYLATION PROTEIN 1-LIKE PROTEIN 4
 
Molecule 2 - CULLIN-1
    Chains: C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: WHB SUBDOMAIN RESIDUES 702-776
    Gene: CUL1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CUL-1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AC
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

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Chain A from PDB  Type:PROTEIN  Length:190
                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh...eehhhhhhhhhhhhh....hhhhhhhhhhh.......eehhhhhhhhhhh...hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.....eeehhhhhhhhhhhhh....hhhhhhhhhhhh...eeehhhhhhhhhhhhhh.............hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5v89 A 101 SSSKRCLEWFYEYAGTDDVVGPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTLDYLRSFLNDSTNFKLIYRYAFDFAREKDQRSLDINTAKCMLGLLLGKIWPLFPVFHQFLEQSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVLLDEFVEWYKDKQ 290
                                   110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290


Chain C from PDB  Type:PROTEIN  Length:67
                                                                                                   
               SCOP domains ------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhheeehhhhhhhhhhhh.hhhhhhhhhhhhhhh..eee....eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                 5v89 C 703 IEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLPRVPVIKKCIDILIEKEYLERVDKDTYSYLA 776
                                   712       722       732     ||747       757       769       
                                                             738|                   766|       
                                                              744                    769
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (41, 42)

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  5v89
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  CUL1_HUMAN | Q13616
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  DCNL4_HUMAN | Q92564
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 Related Entries

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UniProtKB/Swiss-Prot
        CUL1_HUMAN | Q13616: 1ldj 1ldk 1u6g 3rtr 3tdu 3tdz 4f52 4p5o

(-) Related Entries Specified in the PDB File

5v83 5v86 5v88