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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF THE INOSINE MONOPHOSPHATE DEHYDROGENASE FROM BACILLUS ANTHRACIS IN THE COMPLEX WITH A PRODUCT IMP AND THE INHIBITOR P182
 
Authors :  Y. Kim, N. Maltseva, R. Mulligan, M. Makowska-Grzyska, M. Gu, D. Gollap L. Hedstrom, W. F. Anderson, A. Joachimiak, Center For Structural Of Infectious Diseases (Csgid)
Date :  17 Feb 17  (Deposition) - 01 Mar 17  (Release) - 08 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.75
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Impdh, Tim Barrel, Delta Cbs, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Oxidoreductase, Oxidoreductase-Oxidoreductase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Kim, N. Maltseva, R. Mulligan, M. Makowska-Grzyska, M. Gu, D. Gollapalli, L. Hedstrom, W. F. Anderson, A. Joachimiak, Center For Structural Genomics Of Infectious Diseases (Csgid)
Crystal Structure Of The Catalytic Domain Of The Inosine Monophosphate Dehydrogenase From Bacillus Anthracis In The Complex With A Product Imp And The Inhibitor P182
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE
    Chains: A, B, C, D
    EC Number: 1.1.1.205
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3) MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: GUAB, GBAA_0008, A8C77_00065, ABW01_29210
    Organism Scientific: BACILLUS ANTHRACIS
    Organism Taxid: 1392
    Other Details: INTERNAL DELETION, RESIDUES 92-220 ARE REPLACED WITH GLY-GLY
    Synonym: IMPDH

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 14)

Asymmetric/Biological Unit (4, 14)
No.NameCountTypeFull Name
18L14Ligand/IonN-{4-CHLORO-3-[4-(TRIFLUOROMETHYL)-1,3-THIAZOL-2-YL]PHENYL}-N'-(2-{3-[(1E)-N-HYDROXYETHANIMIDOYL]PHENYL}PROPAN-2-YL)UREA
2GOL2Ligand/IonGLYCEROL
3IMP4Ligand/IonINOSINIC ACID
4K4Ligand/IonPOTASSIUM ION

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREALA A:49 , MET A:51 , ASN A:280 , GLY A:305 , SER A:306 , ILE A:307 , CYS A:308 , ASP A:341 , GLY A:342 , GLY A:343 , LEU A:363 , GLY A:364 , SER A:365 , TYR A:388 , GLY A:390 , MET A:391 , GLY A:392 , GLU A:416 , 8L1 A:502binding site for residue IMP A 501
02AC2SOFTWARETHR A:252 , ALA A:253 , SER A:257 , VAL A:260 , THR A:310 , MET A:391 , VAL A:414 , GLU A:416 , IMP A:501 , LEU D:26 , ALA D:441 , GLY D:444 , TYR D:445binding site for residue 8L1 A 502
03AC3SOFTWAREGLY A:303 , GLY A:305 , CYS A:308 , GLU D:470 , SER D:471 , HIS D:472binding site for residue K A 503
04AC4SOFTWAREGLU A:470 , SER A:471 , HIS A:472 , GLY C:303 , GLY C:305 , CYS C:308binding site for residue K A 504
05AC5SOFTWAREALA B:49 , MET B:51 , ASN B:280 , GLY B:305 , SER B:306 , ILE B:307 , CYS B:308 , ASP B:341 , GLY B:342 , GLY B:343 , GLY B:364 , SER B:365 , TYR B:388 , GLY B:390 , MET B:391 , GLY B:392 , GLU B:416 , GLY B:417 , 8L1 B:502binding site for residue IMP B 501
06AC6SOFTWARETHR B:252 , SER B:257 , THR B:310 , MET B:391 , VAL B:414 , GLU B:416 , IMP B:501 , PRO C:27 , GLY C:444 , TYR C:445binding site for residue 8L1 B 502
07AC7SOFTWAREGLY B:303 , GLY B:305 , CYS B:308 , GLU C:470 , SER C:471 , HIS C:472binding site for residue K B 503
08AC8SOFTWAREPRO B:272 , SER B:273 , ASN B:275 , ASN B:296binding site for residue GOL B 504
09AC9SOFTWAREGLU B:470 , SER B:471 , HIS B:472 , GLY D:303 , GLY D:305 , CYS D:308binding site for residue K B 505
10AD1SOFTWAREALA C:49 , MET C:51 , ASN C:280 , GLY C:305 , SER C:306 , ILE C:307 , CYS C:308 , ASP C:341 , GLY C:342 , GLY C:343 , MET C:362 , LEU C:363 , GLY C:364 , SER C:365 , TYR C:388 , GLY C:390 , MET C:391 , GLY C:392 , GLU C:416 , 8L1 C:502binding site for residue IMP C 501
11AD2SOFTWAREALA A:441 , GLY A:444 , THR C:252 , ALA C:253 , SER C:257 , THR C:310 , MET C:391 , GLU C:416 , IMP C:501binding site for residue 8L1 C 502
12AD3SOFTWARESER C:39 , ARG C:268 , SER C:273 , LEU C:274 , ASN C:275 , ASN C:296binding site for residue GOL C 503
13AD4SOFTWAREALA D:49 , MET D:51 , GLY D:305 , SER D:306 , ILE D:307 , CYS D:308 , THR D:310 , ASP D:341 , GLY D:342 , GLY D:343 , GLY D:364 , SER D:365 , TYR D:388 , GLY D:390 , MET D:391 , GLY D:392 , GLU D:416 , GLY D:417 , 8L1 D:501binding site for residue IMP D 500
14AD5SOFTWARELEU B:26 , GLY B:444 , TYR B:445 , VAL D:229 , THR D:252 , ALA D:253 , SER D:257 , THR D:310 , MET D:391 , VAL D:414 , GLU D:416 , IMP D:500binding site for residue 8L1 D 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5UUV)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Gly A:279 -Asn A:280
2Gly B:279 -Asn B:280
3Gly C:279 -Asn C:280
4Gly D:279 -Asn D:280

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5UUV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5UUV)

(-) Exons   (0, 0)

(no "Exon" information available for 5UUV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:346
                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh...ee..hhh.eee...............eeee..eee...eee.......hhhhhhhhhhh..eeee....hhhhhhhhhhhhhhh.....eeee....hhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh...eeeeeee.hhhhhhhhhhhh..eeee........hhhhhh....hhhhhhhhhhhhhhh....eeee....hhhhhhhhhhh...eeeehhhhhh........eee..eeeeeee..............eeeee...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.eee.hhhhhhhhh....ee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5uuv A  -1 NAMWESKFVKEGLTFDDVLLVPAKSDVLPREVSVKTVLSESLQLNIPLISAGMDTVTEADMAIAMARQGGLGIIHKNMSIEQQAEQVDKVKRSGGLLVGAAVGVTADAMTRIDALVKASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLGSMFAGVAESPGETEIYQGRQFKVYRGMGSVGAMEVPEGIEGRVPYKGPLADTVHQLVGGLRAGMGYCGAQDLEFLRENAQFIRMSGAGLLESHPHHVQITKEAPNYS 486
                                     8        18        28        38        48        58        68        78        88   ||  225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395  ||   420       430       440       450       460       470       480      
                                                                                                                        92|                                                                                                                                                                               398|                                                                        
                                                                                                                        220                                                                                                                                                                                414                                                                        


Chain B from PDB  Type:PROTEIN  Length:347
                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh...ee..hhh.eee...............eeee..eee...eee.......hhhhhhhhhhh..eeee....hhhhhhhhhhhhhhh.....eeee....hhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhh..eeee........hhhhhh....hhhhhhhhhhhhhhh....eeee....hhhhhhhhhhh...eeeehhhhhh.......eeee..eeeeeee...hhhhhhh......eeeee...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.eee.hhhhhhhhh....eeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5uuv B  -1 NAMWESKFVKEGLTFDDVLLVPAKSDVLPREVSVKTVLSESLQLNIPLISAGMDTVTEADMAIAMARQGGLGIIHKNMSIEQQAEQVDKVKRSGGLLVGAAVGVTADAMTRIDALVKASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLGSMFAGVAESPGETEIYQGRQFKVYRGMGSVGAMEKLVPEGIEGRVPYKGPLADTVHQLVGGLRAGMGYCGAQDLEFLRENAQFIRMSGAGLLESHPHHVQITKEAPNY 485
                                     8        18        28        38        48        58        68        78        88   ||  225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395   ||  418       428       438       448       458       468       478       
                                                                                                                        92|                                                                                                                                                                                399|                                                                        
                                                                                                                        220                                                                                                                                                                                 413                                                                        


Chain C from PDB  Type:PROTEIN  Length:347
                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........ee..hhh.eee...............eeee..eee...eee.......hhhhhhhhhhh..eeee....hhhhhhhhhhhhhh.....eeeee....hhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh...eeeeeee.hhhhhhhhhhhh..eeee........hhhhhh....hhhhhhhhhhhhhhh....eeee....hhhhhhhhhhh...eeeehhhhhh.......eeee..eeeeeee...hhhhhhhh......eeeee...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.eee.hhhhhhhhh....ee....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5uuv C   0 AMWESKFVKEGLTFDDVLLVPAKSDVLPREVSVKTVLSESLQLNIPLISAGMDTVTEADMAIAMARQGGLGIIHKNMSIEQQAEQVDKVKRSGGLLVGAAVGVTADAMTRIDALVKASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLGSMFAGVAESPGETEIYQGRQFKVYRGMGSVGAMEKGLVPEGIEGRVPYKGPLADTVHQLVGGLRAGMGYCGAQDLEFLRENAQFIRMSGAGLLESHPHHVQITKEAPNY 485
                                     9        19        29        39        49        59        69        79        89  ||   226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396   ||  418       428       438       448       458       468       478       
                                                                                                                       92|                                                                                                                                                                                 400|                                                                        
                                                                                                                       220                                                                                                                                                                                  413                                                                        


Chain D from PDB  Type:PROTEIN  Length:347
                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh...ee..hhh.eee...............eeee..eee...eee.......hhhhhhhhhhh..eeee....hhhhhhhhhhhhhhh.....eeee....hhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhh..eeee........hhhhhh....hhhhhhhhhhhhhhh....eeee....hhhhhhhhhhh...eeeehhhhhh........eee..eeeeeee...hhhhhhh......eeeee...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.eee.hhhhhhhhh....ee....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5uuv D  -1 NAMWESKFVKEGLTFDDVLLVPAKSDVLPREVSVKTVLSESLQLNIPLISAGMDTVTEADMAIAMARQGGLGIIHKNMSIEQQAEQVDKVKRSGGLLVGAAVGVTADAMTRIDALVKASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLGSMFAGVAESPGETEIYQGRQFKVYRGMGSVGAMEKLVPEGIEGRVPYKGPLADTVHQLVGGLRAGMGYCGAQDLEFLRENAQFIRMSGAGLLESHPHHVQITKEAPNY 485
                                     8        18        28        38        48        58        68        78        88   ||  225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395   ||  418       428       438       448       458       468       478       
                                                                                                                        92|                                                                                                                                                                                399|                                                                        
                                                                                                                        220                                                                                                                                                                                 413
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5UUV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5UUV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5UUV)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q81W29_BACAN | Q81W29: 3tsb 3tsd 3usb 4mjm 4my1 4my8 4my9 4mya 4myx 4qm1 5urr 5urs 5uuw 5uuz

(-) Related Entries Specified in the PDB File

3tsb THE FULL-LENGTH PROTEIN IN THE COMPLEX WITH A PHOSPHATE GROUP
3tsd THE FULL-LENGTH PROTEIN IN THE COMPLEX WITH A SUBSTRATE XMP
3usb THE FULL-LENGTH PROTEIN IN THE COMPLEX WITH A PRODUCT IMP
4mjm THE SAME PROTEIN BUT DIFFERENT CONSTRUCT, SHORT DELETION.
4my1 THE SAME PROTEIN CONSTRUCT IN THE COMPLEX WITH A PRODUCT IMP AND THE INHIBITOR P68
4my8 THE SAME PROTEIN CONSTRUCT IN THE COMPLEX WITH A PRODUCT IMP AND THE INHIBITOR Q21
4my9 THE SAME PROTEIN CONSTRUCT IN THE COMPLEX WITH A PRODUCT IMP AND THE INHIBITOR C91
4mya THE SAME PROTEIN CONSTRUCT IN THE COMPLEX WITH A PRODUCT IMP AND THE INHIBITOR A110
4myx THE SAME PROTEIN CONSTRUCT IN THE COMPLEX WITH A PRODUCT IMP AND THE INHIBITOR P32
4qm1 THE SAME PROTEIN CONSTRUCT IN THE COMPLEX WITH A PRODUCT IMP AND THE INHIBITOR D67
5urr THE SAME PROTEIN CONSTRUCT IN THE COMPLEX WITH IMP AND THE INHIBITOR P176 RELATED ID: CSGID-IDP01178 RELATED DB: TARGETTRACK
5urs THE SAME PROTEIN CONSTRUCT IN THE COMPLEX WITH IMP AND THE INHIBITOR P178
5uuw
5uuz