4MYA - JenaLib

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Title :   CRYSTAL STRUCTURE OF THE INOSINE 5'-MONOPHOSPHATE DEHYDROGENASE WITH AN INTERNAL DELETION OF THE CBS DOMAIN FROM BACILLUS ANTHRACIS STR. AMES COMPLEXED WITH INHIBITOR A110

Authors :   Y. Kim, M. Makowska-Grzyska, M. Gu, S. K. Gorla, L. Hedstrom, W. F. Ander A. Joachimiak, Csgid, Center For Structural Genomics Of Infect Diseases (Csgid)

Date :   27 Sep 13 (Deposition) - 01 Jan 14 (Release) - 17 May 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (4x)
Biol. Unit 2: B  (4x)

Keywords :   Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Center For Structural Genomics Of Infectious Diseases, Csgid, Tim Barrel, Alpha-Beta Structure, Oxidoreductase- Oxidoreductase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Kim, M. Makowska-Grzyska, M. Gu, W. F. Anderson, A. Joachimiak
Crystal Structure Of The Inosine 5'-Monophosphate Dehydrogenase With An Internal Deletion Of The Cbs Domain From Bacillus Anthracis Str. Ames Complexed With Inhibitor A110
To Be Published
PubMed: search

Molecule 1 - INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE
	Chains	:	A, B
	EC Number	:	1.1.1.205
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21 MAGIC
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Fragment	:	IMPDH-DELT-L-CBS
	Gene	:	GUAB, BA_0008, BAS0011, GBAA_0008
	Mutation	:	YES
	Organism Common	:	ANTHRAX,ANTHRAX BACTERIUM
	Organism Scientific	:	BACILLUS ANTHRACIS
	Organism Taxid	:	198094
	Strain	:	AMES
	Synonym	:	IMP DEHYDROGENASE, IMPD, IMPDH

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (4x)	:	A
Biological Unit 2 (4x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 7)

No.	Name	Count	Type	Full Name
1	2EY	2	Ligand/Ion	4-{(1R)-1-[1-(4-CHLOROPHENYL)-1H-1,2,3-TRIAZOL-4-YL]ETHOXY}QUINOLIN-2(1H)-ONE
2	GOL	3	Ligand/Ion	GLYCEROL
3	IMP	2	Ligand/Ion	INOSINIC ACID

Biological Unit 1 (3, 16)

No.	Name	Count	Type	Full Name
1	2EY	4	Ligand/Ion	4-{(1R)-1-[1-(4-CHLOROPHENYL)-1H-1,2,3-TRIAZOL-4-YL]ETHOXY}QUINOLIN-2(1H)-ONE
2	GOL	8	Ligand/Ion	GLYCEROL
3	IMP	4	Ligand/Ion	INOSINIC ACID

Biological Unit 2 (3, 12)

No.	Name	Count	Type	Full Name
1	2EY	4	Ligand/Ion	4-{(1R)-1-[1-(4-CHLOROPHENYL)-1H-1,2,3-TRIAZOL-4-YL]ETHOXY}QUINOLIN-2(1H)-ONE
2	GOL	4	Ligand/Ion	GLYCEROL
3	IMP	4	Ligand/Ion	INOSINIC ACID

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ALA A:49 , MET A:51 , ASN A:280 , GLY A:305 , SER A:306 , ILE A:307 , CYS A:308 , ASP A:341 , GLY A:342 , GLY A:343 , MET A:362 , GLY A:364 , SER A:365 , TYR A:388 , GLY A:390 , MET A:391 , GLY A:392 , GLU A:416 , GLY A:417 , 2EY A:501 , HOH A:606 , HOH A:613 , HOH A:624 , HOH A:628 , HOH A:707	BINDING SITE FOR RESIDUE IMP A 500
2	AC2	SOFTWARE	ALA A:253 , THR A:310 , MET A:391 , GLY A:392 , MET A:397 , LEU A:413 , VAL A:414 , GLU A:416 , GLY A:444 , TYR A:445 , IMP A:500 , HOH A:772	BINDING SITE FOR RESIDUE 2EY A 501
3	AC3	SOFTWARE	PHE A:6 , GLU A:9 , THR A:322 , HOH A:627 , HOH A:792 , HOH A:809	BINDING SITE FOR RESIDUE GOL A 502
4	AC4	SOFTWARE	GLU A:38 , SER A:39 , PRO A:272 , SER A:273 , ASN A:296 , HOH A:770	BINDING SITE FOR RESIDUE GOL A 503
5	AC5	SOFTWARE	ALA B:49 , MET B:51 , ASN B:280 , GLY B:305 , SER B:306 , ILE B:307 , CYS B:308 , ASP B:341 , GLY B:342 , GLY B:343 , MET B:362 , GLY B:364 , SER B:365 , TYR B:388 , GLY B:390 , MET B:391 , GLY B:392 , GLU B:416 , GLY B:417 , 2EY B:501 , HOH B:604 , HOH B:610 , HOH B:627 , HOH B:640 , HOH B:650	BINDING SITE FOR RESIDUE IMP B 500
6	AC6	SOFTWARE	MET B:391 , GLY B:392 , MET B:397 , LEU B:413 , VAL B:414 , GLU B:416 , GLY B:444 , TYR B:445 , IMP B:500	BINDING SITE FOR RESIDUE 2EY B 501
7	AC7	SOFTWARE	GLU B:9 , THR B:322 , HOH B:646 , HOH B:808	BINDING SITE FOR RESIDUE GOL B 502

(no "SS Bond" information available for 4MYA)

Asymmetric Unit

No.	Residues
1	Gly A:279	-	Asn A:280
2	Gly B:279	-	Asn B:280

(no "SAP(SNP)/Variant" information available for 4MYA)

(no "PROSITE Motif" information available for 4MYA)

(no "Exon" information available for 4MYA)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:349
                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains d4myaa_ A: automated matches                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh.......hhh.eee.......hhhhh...eeee..eee...eee.......hhhhhhhhhhh..eeee....hhhhhhhhhhhhhh......eeee....hhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh...eeeeeee.hhhhhhhhhhhh..eeee........hhhhhh....hhhhhhhhhhhhhhh....eeee....hhhhhhhhhhh...eeee..............eee..eeeeeee...hhhhhhh........eeeee...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.eee.hhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mya A  -1 NAMWESKFVKEGLTFDDVLLVPAKSDVLPREVSVKTVLSESLQLNIPLISAGMDTVTEADMAIAMARQGGLGIIHKNMSIEQQAEQVDKVKRSGGLLVGAAVGVTADAMTRIDALVKASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLGSMFAGVAESPGETEIYQGRQFKVYRGMGSVGAMEKKKLVPEGIEGRVPYKGPLADTVHQLVGGLRAGMGYCGAQDLEFLRENAQFIRMSGAGLLESHPHHVQITKEAPNY 485
                                     8        18        28        38        48        58        68        78        88   ||  225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395   ||  416       426       436       446       456       466       476         
                                                                                                                        92|                                                                                                                                                                                399|                                                                          
                                                                                                                        220                                                                                                                                                                                 411

Chain B from PDB  Type:PROTEIN  Length:348
                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d4myab_ B: automated matches                                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhh.......hhh.eee.......hhhhh...eeee..eee...eee.......hhhhhhhhhhh..eeee....hhhhhhhhhhhhhh......eeee....hhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh...eeeeeee.hhhhhhhhhhhh..eeee........hhhhhh....hhhhhhhhhhhhhhh....eeee....hhhhhhhhhhh...eeee..............ee....eeeeee...hhhhhhh.......eeeee...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.eee.hhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4mya B  -1 NAMWESKFVKEGLTFDDVLLVPAKSDVLPREVSVKTVLSESLQLNIPLISAGMDTVTEADMAIAMARQGGLGIIHKNMSIEQQAEQVDKVKRSGGLLVGAAVGVTADAMTRIDALVKASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLGSMFAGVAESPGETEIYQGRQFKVYRGMGSVGAMEKKLVPEGIEGRVPYKGPLADTVHQLVGGLRAGMGYCGAQDLEFLRENAQFIRMSGAGLLESHPHHVQITKEAPNY 485
                                     8        18        28        38        48        58        68        78        88   ||  225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395   ||  417       427       437       447       457       467       477        
                                                                                                                        92|                                                                                                                                                                                399|                                                                         
                                                                                                                        220                                                                                                                                                                                 412

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: TIM beta/alpha-barrel (3956)

Superfamily: Inosine monophosphate dehydrogenase (IMPDH) (29)

Family: automated matches (11)

Protein domain: automated matches (11)

Bacillus anthracis [TaxId: 198094] (4)

1a	d4myaa_	A:
1b	d4myab_	B:

(no "CATH Domain" information available for 4MYA)

(no "Pfam Domain" information available for 4MYA)

Asymmetric Unit(hide GO term definitions)

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	Cis Peptide Bonds
		Gly A:279 - Asn A:280	[ RasMol ]
		Gly B:279 - Asn B:280	[ RasMol ]

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	4mya
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3stb	WILD-TYPE, PHOSPHATE BOUND FORM
3std	WILD-TYPE, COMPLEXED WITH PRODUCT, XMP
3sub	WILD-TYPE, SUBSTRATE IMP BOUND-FORM
4mjm	SHORT INTERNAL DELETION OF CBS DOMAIN (95-200) AND GLY IS INSERTED AT 95
4mxs	AN INTERNAL DELETION OF THE CBS DOMAIN COMPLEXED WITH INHIBITOR D67
4my1	AN INTERNAL DELETION OF THE CBS DOMAIN COMPLEXED WITH INHIBITOR P68
4my8	AN INTERNAL DELETION OF THE CBS DOMAIN COMPLEXED WITH INHIBITOR Q21
4my9	AN INTERNAL DELETION OF THE CBS DOMAIN COMPLEXED WITH INHIBITOR C91 RELATED ID: IDP01178 RELATED DB: TARGETTRACK

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 7)

Sites (7, 7)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

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SCOP Domains (1, 2)

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Pfam Domains (0, 0)

Gene Ontology (8, 8)

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