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(-) Description

Title :  MALATE DEHYDROGENASE FROM METHYLOBACTERIUM EXTORQUENS, COMPLEXED WITH NAD
 
Authors :  J. M. Gonzalez
Date :  18 Jan 17  (Deposition) - 08 Feb 17  (Release) - 08 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.53
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Malate, Dehydrogenase, Nad, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. M. Gonzalez, R. Marti-Arbona, C. J. Unkefer
Malate Dehydrogenase From Methylobacterium Extorquens
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MALATE DEHYDROGENASE
    Chains: A
    EC Number: 1.1.1.37
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: MDH
    Organism Scientific: METHYLOBACTERIUM EXTORQUENS
    Organism Taxid: 408

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric Unit (3, 4)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
2CL1Ligand/IonCHLORIDE ION
3NAD1Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CL-1Ligand/IonCHLORIDE ION
3NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:12 , GLN A:13 , ILE A:14 , PHE A:33 , ASP A:34 , ILE A:35 , VAL A:36 , THR A:78 , ALA A:79 , GLY A:80 , VAL A:99 , ILE A:119 , ASN A:121 , MET A:144 , LEU A:148 , HIS A:176 , HOH A:512 , HOH A:517 , HOH A:522 , HOH A:528 , HOH A:546 , HOH A:549 , HOH A:559 , HOH A:579 , HOH A:580 , HOH A:595 , HOH A:635 , HOH A:642 , HOH A:658 , HOH A:712 , HOH A:726binding site for residue NAD A 401
2AC2SOFTWAREGLU A:287 , HOH A:612 , HOH A:614 , HOH A:673 , HOH A:705 , HOH A:714binding site for residue CA A 402
3AC3SOFTWAREGLU A:166 , HOH A:510 , HOH A:607 , HOH A:646 , HOH A:663 , HOH A:728binding site for residue CA A 403
4AC4SOFTWAREARG A:154 , ARG A:252 , HOH A:574 , HOH A:727binding site for residue CL A 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5UJK)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Asn A:121 -Pro A:122

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5UJK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5UJK)

(-) Exons   (0, 0)

(no "Exon" information available for 5UJK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:315
                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee..hhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhhh....eeee.hhhhhh...eeee..........hhhhhhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhh.hhh.eee.hhhhhhhhhhhhhhhhhh.hhh.ee..eee.hhh.eee.hhh.ee..eehhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh...eeeeeeeeee.hhh.eeeeeeeeeeee..eeeee.....hhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ujk A   2 ARSKIALIGAGQIGGTLAHLAGLKELGDVVLFDIVDGVPQGKALDIAESAPVDGFDAKYSGASDYSAIAGADVVIVTAGVPRKPGMSRDDLIGINLKVMEAVGAGIKEHAPDAFVICITNPLDAMVWALQKFSGLPTNKVVGMAGVLDSARFRHFLAEEFGVSVEDVTAFVLGGHGDDMVPLTRYSTVAGVPLTDLVKLGWTTQEKLDAMVERTRKGGGEIVNLLKTGSAFYAPAASAIAMAESYLRDKKRVLPCAAYLDGQYGIDGLYVGVPVVIGENGVERVLEVTFNDDEKAMFEKSVNSVKGLIEACKSVN 316
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5UJK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5UJK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5UJK)

(-) Gene Ontology  (8, 16)

Asymmetric Unit(hide GO term definitions)

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    Asn A:121 - Pro A:122   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        MDH_METEA | Q84FY8: 5ulv
        MDH_METEP | A9W386: 4ror 4ros

(-) Related Entries Specified in the PDB File

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