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(-) Description

Title :  CRYSTAL STRUCTURE OF METHYLOBACTERIUM EXTORQUENS MALATE DEHYDROGENASE COMPLEXED WITH OXALOACETATE AND ADENOSINE-5-DIPHOSPHORIBOSE
 
Authors :  J. M. Gonzalez, R. Marti-Arbona, C. J. Unkefer
Date :  28 Oct 14  (Deposition) - 17 Dec 14  (Release) - 17 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (4x)
Keywords :  Dehydrogenase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. M. Gonzalez, R. Marti-Arbona, C. J. Unkefer
Crystal Structure Of Methylobacterium Extorquens Malate Dehydrogenase Complexed With Oxaloacetate And Adenosine-5-Diphosphoribose
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MALATE DEHYDROGENASE
    Chains: A
    EC Number: 1.1.1.37
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: MDH, MEXT_1643
    Organism Scientific: METHYLOBACTERIUM EXTORQUENS
    Organism Taxid: 419610
    Strain: PA1

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric Unit (3, 4)
No.NameCountTypeFull Name
1APR1Ligand/IonADENOSINE-5-DIPHOSPHORIBOSE
2CA2Ligand/IonCALCIUM ION
3OAA1Ligand/IonOXALOACETATE ION
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1APR1Ligand/IonADENOSINE-5-DIPHOSPHORIBOSE
2CA-1Ligand/IonCALCIUM ION
3OAA1Ligand/IonOXALOACETATE ION
Biological Unit 2 (2, 8)
No.NameCountTypeFull Name
1APR4Ligand/IonADENOSINE-5-DIPHOSPHORIBOSE
2CA-1Ligand/IonCALCIUM ION
3OAA4Ligand/IonOXALOACETATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:287 , HOH A:619 , HOH A:620 , HOH A:621 , HOH A:622 , HOH A:623BINDING SITE FOR RESIDUE CA A 401
2AC2SOFTWAREGLU A:166 , HOH A:519 , HOH A:561 , HOH A:603BINDING SITE FOR RESIDUE CA A 402
3AC3SOFTWAREARG A:83 , ARG A:89 , ASN A:121 , LEU A:148 , ARG A:152 , HIS A:176 , GLY A:219 , ALA A:231 , APR A:404 , HOH A:526 , HOH A:577 , HOH A:591BINDING SITE FOR RESIDUE OAA A 403
4AC4SOFTWAREGLY A:12 , GLN A:13 , ILE A:14 , PHE A:33 , ASP A:34 , ILE A:35 , VAL A:36 , THR A:78 , ALA A:79 , GLY A:80 , VAL A:81 , PRO A:82 , ASN A:96 , VAL A:99 , ILE A:119 , THR A:120 , ASN A:121 , OAA A:403 , HOH A:510 , HOH A:526 , HOH A:534 , HOH A:547 , HOH A:552 , HOH A:591 , HOH A:611BINDING SITE FOR RESIDUE APR A 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ROS)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Asn A:121 -Pro A:122

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ROS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ROS)

(-) Exons   (0, 0)

(no "Exon" information available for 4ROS)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:318
                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeee..hhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhhh....eeee.hhhhhh...eeee..........hhhhhhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhh.hhh.eee.hhhhhhhhhhhhhhhhhh.hhh.ee..ee.......ee.hhh.ee..eehhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh...eeeeeeeeee.hhh.eeeeeeeeeeee..eeeee.....hhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ros A   2 ARSKIALIGAGQIGGTLAHLAGLKELGDVVLFDIVDGVPQGKALDIAESAPVDGFDAKYSGASDYSAIAGADVVIVTAGVPRKPGMSRDDLIGINLKVMEAVGAGIKEHAPDAFVICITNPLDAMVWALQKFSGLPTNKVVGMAGVLDSARFRHFLAEEFGVSVEDVTAFVLGGHGDDMVPLTRYSTVAGVPLTDLVKLGWTTQEKLDAMVERTRKGGGEIVNLLKTGSAFYAPAASAIAMAESYLRDKKRVLPCAAYLDGQYGIDGLYVGVPVVIGENGVERVLEVTFNDDEKAMFEKSVNSVKGLIEACKSVNDKL 319
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ROS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ROS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ROS)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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        MDH_METEP | A9W386: 4ror 5ujk

(-) Related Entries Specified in the PDB File

4rop 4roq 4ror