5TKG - JenaLib

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Biological Unit 3 (Jmol Viewer)

Title :   NEUROSPORA CRASSA POLYSACCHARIDE MONOOXYGENASE 2 RESTING STATE

Authors :   W. B. O'Dell, F. Meilleur

Date :   06 Oct 16 (Deposition) - 17 May 17 (Release) - 17 May 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.20

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: A,B  (1x)

Keywords :   Oxidoreductase, Polysaccharide Monooxygenase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   W. B. O'Dell, P. K. Agarwal, F. Meilleur
Oxygen Activation At The Active Site Of A Fungal Lytic Polysaccharide Monooxygenase.
Angew. Chem. Int. Ed. Engl. V. 56 767 2017
PubMed-ID: 28004877 | Reference-DOI: 10.1002/ANIE.201610502

Molecule 1 - LYTIC POLYSACCHARIDE MONOOXYGENASE
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	PICHIA PASTORIS
	Expression System Plasmid	:	PPICZALPHAA
	Expression System Strain	:	SUPERMAN5
	Expression System Taxid	:	4922
	Expression System Vector Type	:	PLASMID
	Gene	:	G15G9.090, GE21DRAFT_7469
	Organism Scientific	:	NEUROSPORA CRASSA
	Organism Taxid	:	5141
	Synonym	:	RELATED TO CEL1 PROTEIN

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 9)

No.	Name	Count	Type	Full Name
1	CU	2	Ligand/Ion	COPPER (II) ION
2	MAN	1	Ligand/Ion	ALPHA-D-MANNOSE
3	NAG	4	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
4	OXY	2	Ligand/Ion	OXYGEN MOLECULE

Biological Unit 1 (2, 3)

No.	Name	Count	Type	Full Name
1	CU	-1	Ligand/Ion	COPPER (II) ION
2	MAN	-1	Ligand/Ion	ALPHA-D-MANNOSE
3	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
4	OXY	1	Ligand/Ion	OXYGEN MOLECULE

Biological Unit 2 (3, 4)

No.	Name	Count	Type	Full Name
1	CU	-1	Ligand/Ion	COPPER (II) ION
2	MAN	1	Ligand/Ion	ALPHA-D-MANNOSE
3	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
4	OXY	1	Ligand/Ion	OXYGEN MOLECULE

Biological Unit 3 (3, 7)

No.	Name	Count	Type	Full Name
1	CU	-1	Ligand/Ion	COPPER (II) ION
2	MAN	1	Ligand/Ion	ALPHA-D-MANNOSE
3	NAG	4	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
4	OXY	2	Ligand/Ion	OXYGEN MOLECULE

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:1 , HIS A:84 , GLN A:166 , TYR A:168 , HOH A:647 , HOH B:557	binding site for residue CU A 303
2	AC2	SOFTWARE	GLU A:30 , PRO A:163 , HOH A:403 , HOH A:405 , HIS B:157 , GLN B:166	binding site for residue OXY B 304
3	AC3	SOFTWARE	HIS A:157 , GLN A:166 , GLU B:30 , PRO B:163 , HOH B:502 , HOH B:557	binding site for residue OXY A 401
4	AC4	SOFTWARE	HOH A:432 , HIS B:1 , HIS B:84 , GLN B:166 , TYR B:168 , HOH B:728	binding site for residue CU B 405
5	AC5	SOFTWARE	ASN A:60 , GLN A:112 , SER A:135 , ILE A:136 , LYS A:137 , HOH A:839 , HOH A:412 , HOH A:417 , HOH A:478 , HOH A:506 , HOH A:520 , HOH A:580 , HOH A:636 , GLY B:58	binding site for Poly-Saccharide residues NAG A 301 through NAG A 302 bound to ASN A 60
6	AC6	SOFTWARE	LYS A:137 , ASN B:60 , GLN B:112 , SER B:135 , ILE B:136 , LYS B:137 , HOH B:504 , HOH B:506 , HOH B:512 , HOH B:528 , HOH B:529 , HOH B:639 , HOH B:658 , HOH B:659 , HOH B:684 , HOH B:708 , HOH B:717 , HOH B:802	binding site for Poly-Saccharide residues NAG B 402 through MAN B 404 bound to ASN B 60

Asymmetric Unit

No.	Residues
1	A:39	-	A:171
2	A:141	-	A:223
3	B:39	-	B:171
4	B:141	-	B:223

Asymmetric Unit

No.	Residues
1	Ser A:42	-	Pro A:43
2	Tyr A:162	-	Pro A:163
3	Phe A:190	-	Pro A:191
4	Trp A:207	-	Pro A:208
5	Ser B:42	-	Pro B:43
6	Tyr B:162	-	Pro B:163
7	Phe B:190	-	Pro B:191
8	Trp B:207	-	Pro B:208

(no "SAP(SNP)/Variant" information available for 5TKG)

(no "PROSITE Motif" information available for 5TKG)

(no "Exon" information available for 5TKG)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:223
                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee..ee......ee............hhhhh..............eeee...eeeeeee........hhhhh........eeeeeee..........eeeeeeeeee.......hhhhhhhh...eeeee.......eeeeeeeeeee..........eeeeeeeeeeee..........eee................................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tkg A   1 HTIFSSLEVNGVNQGLGEGVRVPTYNGPIEDVTSASIACNGSPNTVASTSKVITVQAGTNVTAIWRYMLSTTGDSPADVMDSSHKGPTIAYLKKVDNAATASGVGNGWFKIQQDGMDSSGVWGTERVINGKGRHSIKIPECIAPGQYLLRAEMIALHAASNYPGAQFYMECAQLNVVGGTGAKTPSTVSFPGAYSGSDPGVKISIYWPPVTSYTVPGPSVFTC 223
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220

Chain B from PDB  Type:PROTEIN  Length:223
                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee..ee....................hhhhh..............eeee...eeeeeee........hhhhh........eeeeeee..........eeeeeeeeee.......hhhhhhhh...eeeee.......eeeeeeeeeee..........eeeeeeeeeeee..........eee................................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tkg B   1 HTIFSSLEVNGVNQGLGEGVRVPTYNGPIEDVTSASIACNGSPNTVASTSKVITVQAGTNVTAIWRYMLSTTGDSPADVMDSSHKGPTIAYLKKVDNAATASGVGNGWFKIQQDGMDSSGVWGTERVINGKGRHSIKIPECIAPGQYLLRAEMIALHAASNYPGAQFYMECAQLNVVGGTGAKTPSTVSFPGAYSGSDPGVKISIYWPPVTSYTVPGPSVFTC 223
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5TKG)

(no "CATH Domain" information available for 5TKG)

(no "Pfam Domain" information available for 5TKG)

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	Ligands, Modified Residues, Ions
		CU	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		MAN	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		NAG	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		OXY	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

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		AC5	[ RasMol ]	+environment [ RasMol ]
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	Cis Peptide Bonds
		Phe A:190 - Pro A:191	[ RasMol ]
		Phe B:190 - Pro B:191	[ RasMol ]
		Ser A:42 - Pro A:43	[ RasMol ]
		Ser B:42 - Pro B:43	[ RasMol ]
		Trp A:207 - Pro A:208	[ RasMol ]
		Trp B:207 - Pro B:208	[ RasMol ]
		Tyr A:162 - Pro A:163	[ RasMol ]
		Tyr B:162 - Pro B:163	[ RasMol ]

Biological Units
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		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]

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Description

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Chains, Units

Ligands, Modified Residues, Ions (4, 9)

Sites (6, 6)

SS Bonds (4, 4)

Cis Peptide Bonds (8, 9)

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SAPs(SNPs)/Variants (0, 0)

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