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(-) Description

Title :  CRYSTAL STRUCTURE OF CURJ CARBON METHYLTRANSFERASE
 
Authors :  M. A. Skiba, J. L. Smith
Date :  30 Sep 16  (Deposition) - 19 Oct 16  (Release) - 28 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  B  (1x)
Biol. Unit 2:  A  (1x)
Keywords :  Methyltransferase, Transferase, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. A. Skiba, A. P. Sikkema, W. D. Fiers, W. H. Gerwick, D. H. Sherman, C. C. Aldrich, J. L. Smith
Domain Organization And Active Site Architecture Of A Polyketide Synthase C-Methyltransferase.
Acs Chem. Biol. V. 11 3319 2016
PubMed-ID: 27723289  |  Reference-DOI: 10.1021/ACSCHEMBIO.6B00759

(-) Compounds

Molecule 1 - CURJ
    Chains: B, A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 1269-1649
    Gene: LYNGBM3L_74460
    Organism Scientific: MOOREA PRODUCENS 3L
    Organism Taxid: 489825
    Synonym: POLYKETIDE SYNTHASE MODULE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x):  B
Biological Unit 2 (1x): A 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric Unit (3, 4)
No.NameCountTypeFull Name
1FLC1Ligand/IonCITRATE ANION
2GOL1Ligand/IonGLYCEROL
3SAH2Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1FLC-1Ligand/IonCITRATE ANION
2GOL1Ligand/IonGLYCEROL
3SAH1Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1FLC1Ligand/IonCITRATE ANION
2GOL-1Ligand/IonGLYCEROL
3SAH1Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR B:166 , TYR B:169 , GLY B:205 , ALA B:206 , GLY B:207 , GLY B:210 , THR B:211 , ASP B:230 , ILE B:231 , PHE B:235 , LEU B:254 , ASP B:255 , ILE B:256 , ALA B:276 , ASN B:277 , VAL B:278 , HOH B:610 , HOH B:616 , HOH B:627binding site for residue SAH B 501
2AC2SOFTWARETYR B:169 , ALA B:307 , PHE B:318 , HOH B:604 , HOH B:648binding site for residue GOL B 502
3AC3SOFTWARETHR A:166 , GLY A:205 , ALA A:206 , GLY A:207 , THR A:208 , GLY A:210 , THR A:211 , ASP A:230 , ILE A:231 , PHE A:235 , LEU A:254 , ASP A:255 , ILE A:256 , GLU A:257 , ALA A:276 , ASN A:277 , VAL A:278 , HOH A:618 , HOH A:626binding site for residue SAH A 501
4AC4SOFTWAREASP A:45 , VAL A:48 , GLN A:110 , ARG A:197 , HOH A:609binding site for residue FLC A 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5THZ)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Leu B:359 -Pro B:360
2Leu A:359 -Pro A:360

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5THZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5THZ)

(-) Exons   (0, 0)

(no "Exon" information available for 5THZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:376
                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........eehhhhhhhhhh.hhhhhhhhhhhhhhhhhh..eeee..eeee.......hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh....hhhhhh.....hhhhhhh..hhhhhhhhhhhhhhhhhhhh.......eeeeee......hhhhhhhhh....eeeeeee.hhhhhhhhhhhh.....eeeee.....hhhhh......eeeeeee.hhhhh.hhhhhhhhhhhheeeeeeeeeeee...hhhhhhhhhhhhhhhh.............hhhhhhhhhhhh.eeeeeee......hhhhh.eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5thz A   6 LLDPVEVSQQLAPSLTELVTLLDNARTSEIGTQLEELSVDYIVQGLLQMGWSYQPTESFDLDAAAQCLGVVPTQVRLFERLLQILAEVGILQSNQQQWQVQKTAQKVNPSKQSQSLLSQYPDEAATLTLLERCASQLSGVLRGEIDPVQLVFPQGDLTTATQLYKDSAVAKVMNTIVEKVIMKAMEKLPPSRGIRLLEIGAGTGGTTSYILPHLNPNQTEYIFTDIGALFTSKAQEKFQDYRFLGYQTLDIEVDPSSQGFESHRYDVIIAANVLHATTSLKQTLSHVRQLLAPGGILVLYEATTRSRWVDLIFGLLEGWWKFTDYELRPDYPLLNREQWKKVLSETGFTQVVTLPEVEGMAEALSQQTVIVAQAAS 381
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375      


Chain B from PDB  Type:PROTEIN  Length:387
                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........eeehhhhhhhhh.hhhhhhhhhhhhhhhhhh..eeee..eeee.......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh...hhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh........eeeeee......hhhhhhhhhhhh.eeeeeee.hhhhhhhhhhhh.....eeeee.....hhhhhh.....eeeeeee.hhhhh.hhhhhhhhhhhheeeeeeeeeeee...hhhhhhhhhhhhhhhh.............hhhhhhhhhhhh.eeeeeee......hhhhhheeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5thz B  -5 YFQSNALPPDFLLDPVEVSQQLAPSLTELVTLLDNARTSEIGTQLEELSVDYIVQGLLQMGWSYQPTESFDLDAAAQCLGVVPTQVRLFERLLQILAEVGILQSNQQQWQVQKTAQKVNPSKQSQSLLSQYPDEAATLTLLERCASQLSGVLRGEIDPVQLVFPQGDLTTATQLYKDSAVAKVMNTIVEKVIMKAMEKLPPSRGIRLLEIGAGTGGTTSYILPHLNPNQTEYIFTDIGALFTSKAQEKFQDYRFLGYQTLDIEVDPSSQGFESHRYDVIIAANVLHATTSLKQTLSHVRQLLAPGGILVLYEATTRSRWVDLIFGLLEGWWKFTDYELRPDYPLLNREQWKKVLSETGFTQVVTLPEVEGMAEALSQQTVIVAQAAS 381
                                     4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5THZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5THZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5THZ)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/TrEMBL
        F4Y426_9CYAN | F4Y426: 5thy 5tz6

(-) Related Entries Specified in the PDB File

5thy