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(-) Description

Title :  CRYSTAL STRUCTURE OF CURJ DEHYDRATASE H978F INACTIVE MUTANT IN COMPLEX WITH COMPOUND 21
 
Authors :  G. J. Dodge, J. L. Smith
Date :  21 Nov 16  (Deposition) - 11 Jan 17  (Release) - 11 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Dehydratase, Curacin, Polyketide Synthase, Lyase-Lyase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. D. Fiers, G. J. Dodge, D. H. Sherman, J. L. Smith, C. C. Aldrich
Vinylogous Dehydration By A Polyketide Dehydratase Domain I Curacin Biosynthesis.
J. Am. Chem. Soc. V. 138 16024 2016
PubMed-ID: 27960309  |  Reference-DOI: 10.1021/JACS.6B09748

(-) Compounds

Molecule 1 - CURJ
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)PRARE AI
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: LYNGBM3L_74460
    Mutation: YES
    Organism Scientific: MOOREA PRODUCENS 3L
    Organism Taxid: 489825
    Synonym: POLYKETIDE SYNTHASE MODULE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
17OD1Ligand/Ion(2E,5R)-5-HYDROXY-2-METHYLHEPT-2-ENOIC ACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:978 , ASP A:1156 , VAL A:1178 , PRO A:1179binding site for residue 7OD A 1301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5TZ6)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Gln A:1083 -Ser A:1084
2Ser A:1084 -Leu A:1085
3Leu A:1085 -Ile A:1086
4Ile A:1086 -Pro A:1087

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5TZ6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5TZ6)

(-) Exons   (0, 0)

(no "Exon" information available for 5TZ6)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:290
                                                                                                                                                                                                                                                                                                                                   
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eee.......eeeeeee....hhhhh.eee..eeeehhhhhhhhhhhhhhhhh....eeeeeee....eee.....eeeeeeeeee..eeeeeeeee.........eeeeeeeeee........hhhhhhhhh.eeehhhhhhhhhhhh.eee.hhhh.eeeeee...eeeeeee.............hhhhhhhhhhhhhhhh.........eeeeeeeeeeee.......eeeeeeeeee......eeeeeeeee.....eeeeeeeeeeeeehhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5tz6 A  943 TKLHPLINQKFQSPLSKEIFFESYFSTENLPFLADFIVYEQVVVPGASHISLLLAAASLTFAATECQIEDILFPQALAIPEQGVRTVQVVLTPQNNSFSFQVISFDDSLHISDWAVHATGKLSVANAEQSLIPLEEIQARCSQKIDSAEIYQHLWDRQIHLGQSFRWIEQVWLGEGEVLCQMKVPKTILNTTKYQLHPTLVDSCFQSIIALVLDQSGNKNETFVPFSIDKFTFYNSSDNDLLWCYTCGSKDKQSGEKFKADIQLFDQHGQLVAQVIGFEGRKANPKILLM 1244
                                   952       962       972       982       992      1002      1012      1022      1032      1042      1064      1074      1084      1094      1104      1114      1124      1134      1144      1154      1164      1174      1184      1194      1204      1214      1224      1234      1244
                                                                                                                                     1051|                                                                                                                                                                                    
                                                                                                                                      1064                                                                                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:281
                                                                                                                                                                                                                                                                                                                          
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeee..eeeeeeeeee....hhhhh.eee..eeeehhhhhhhhhhhhhhhhh....eeeeeee....eee.....eeeeeeeee....eeeeeeeee......eeeeeeeeee.....hhhhhhhh.eee.hhhhhhhhhhh.eee.hhhh.eeeeee...eeeeeee.............hhhhhhhhhhhhhhhh......eeeeeeeeeeee.......eeeeeeeeee......eeeeeeeee.....eeeeeeeeeeeeehhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5tz6 B  943 TKLHPLINQKFQSPLSKEIFFESYFSTENLPFLADFIVYEQVVVPGASHISLLLAAASLTFAATECQIEDILFPQALAIPEQGVRTVQVVLTPQNNSFSFQVISFDDSLSDWAVHATGKLSVANAEPLEEIQARCSQKIDSAEIYQHLWDRQIHLGQSFRWIEQVWLGEGEVLCQMKVPKTILNTTKYQLHPTLVDSCFQSIIALVLDNKNETFVPFSIDKFTFYNSSDNDLLWCYTCGSKDKQSGEKFKADIQLFDQHGQLVAQVIGFEGRKANPKILLM 1244
                                   952       962       972       982       992      1002      1012      1022      1032      1042      1066      1076     |1090      1100      1110      1120      1130      1140      1150      1160      1173      1183      1193      1203      1213      1223      1233      1243 
                                                                                                                                     1051|            1082|                                                                             1168|                                                                        
                                                                                                                                      1066             1087                                                                              1172
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5TZ6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5TZ6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5TZ6)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/TrEMBL
        F4Y426_9CYAN | F4Y426: 5thy 5thz

(-) Related Entries Specified in the PDB File

5tz5 5tz7