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(-) Description

Title :  SYNTHESIS AND BIOLOGICAL EVALUATION OF NOVEL SELECTIVE ANDROGEN RECEPTOR MODULATORS (SARMS). PART II: OPTIMIZATION OF 4-(PYRROLIDIN-1-YL)BENZONITRILE DERIVATIVES
 
Authors :  K. P. Wilson
Date :  07 Sep 16  (Deposition) - 26 Apr 17  (Release) - 26 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.71
Chains :  Asym./Biol. Unit :  A
Keywords :  Androgen Receptor, Selective Androgen Receptor Modulators, Sarms, Hormone Receptor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Asano, T. Hitaka, T. Imada, M. Yamada, M. Morimoto, H. Shinohara, T. Hara, M. Yamaoka, T. Santou, M. Nakayama, Y. Imai, N. Habuka, J. Yano K. Wilson, H. Fujita, A. Hasuoka
Synthesis And Biological Evaluation Of Novel Selective Androgen Receptor Modulators (Sarms). Part Ii: Optimization Of 4-(Pyrrolidin-1-Yl)Benzonitrile Derivatives.
Bioorg. Med. Chem. Lett. V. 27 1897 2017
PubMed-ID: 28363748  |  Reference-DOI: 10.1016/J.BMCL.2017.03.038

(-) Compounds

Molecule 1 - ANDROGEN RECEPTOR
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 132-388
    Gene: AR, DHTR, NR3C4
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DIHYDROTESTOSTERONE RECEPTOR,NUCLEAR RECEPTOR SUBFAMILY 3 GROUP C MEMBER 4

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
177U1Ligand/Ion2-CHLORO-4-[(2S,3S)-3-HYDROXY-2-METHYLPYRROLIDIN-1-YL]-3-METHYLBENZONITRILE
2GOL2Ligand/IonGLYCEROL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:697 , LYS A:777 , ARG A:779 , HOH A:1123binding site for residue GOL A 1001
2AC2SOFTWAREILE A:680 , PRO A:682 , HIS A:714 , SER A:908 , LYS A:910binding site for residue GOL A 1002
3AC3SOFTWARELEU A:704 , ASN A:705 , LEU A:707 , GLN A:711 , ARG A:752 , LEU A:873 , THR A:877binding site for residue 77U A 1003

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:844 -A:852

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5T8E)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5T8E)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5T8E)

(-) Exons   (0, 0)

(no "Exon" information available for 5T8E)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:249
                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee..eeehhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh..eee.....hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh..eee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5t8e A 671 PIFLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPIARELHQFTFDLLIKSHMVSVDFPEMMAEIISVQVPKILSGKVKPIYFHTQ 919
                                   680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5T8E)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5T8E)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5T8E)

(-) Gene Ontology  (55, 55)

Asymmetric/Biological Unit(hide GO term definitions)

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  5t8e
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  ANDR_HUMAN | P10275
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ANDR_HUMAN | P10275: 1e3g 1gs4 1t5z 1t63 1t65 1xj7 1xow 1xq3 1z95 2am9 2ama 2amb 2ao6 2ax6 2ax7 2ax8 2ax9 2axa 2hvc 2oz7 2pio 2pip 2piq 2pir 2pit 2piu 2piv 2piw 2pix 2pkl 2pnu 2q7i 2q7j 2q7k 2q7l 2yhd 2ylo 2ylp 2ylq 2z4j 3b5r 3b65 3b66 3b67 3b68 3btr 3l3x 3l3z 3rlj 3rll 3v49 3v4a 3zqt 4hlw 4k7a 4oea 4oed 4oey 4oez 4ofr 4ofu 4ogh 4oh5 4oh6 4oha 4oil 4oiu 4oj9 4ojb 4ok1 4okb 4okt 4okw 4okx 4olm 4ql8 5cj6 5jjm 5t8j 5v8q

(-) Related Entries Specified in the PDB File

5t8j