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(-) Description

Title :  CRYSTAL STRUCTURE OF T877A-AR-LBD BOUND WITH CO-REGULATOR PEPTIDE
 
Authors :  J. S. Liu, C. L. Hsu, W. G. Wu
Date :  17 Jan 14  (Deposition) - 20 Aug 14  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.56
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Alpha-Helix, Hormone/Growth Factor Receptor, Phosphorylation, Hormone Receptor-Peptide Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. L. Hsu, J. S. Liu, P. L. Wu, H. H. Guan, Y. L. Chen, A. C. Lin, H. J. Ting, S. T. Pang, S. D. Yeh, W. L. Ma, C. J. Chen, W. G. Wu, C. Chang
Identification Of A New Androgen Receptor (Ar) Co-Regulator Bud31 And Related Peptides To Suppress Wild-Type And Mutate Ar-Mediated Prostate Cancer Growth Via Peptide Screening An X-Ray Structure Analysis.
Mol Oncol V. 8 1575 2014
PubMed-ID: 25091737  |  Reference-DOI: 10.1016/J.MOLONC.2014.06.009

(-) Compounds

Molecule 1 - ANDROGEN RECEPTOR
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: LIGAND BINDING DOMAIN
    Gene: AR, DHTR, NR3C4
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DIHYDROTESTOSTERONE RECEPTOR, NUCLEAR RECEPTOR SUBFAMILY 3 GROUP C MEMBER 4
 
Molecule 2 - PROTEIN BUD31 HOMOLOG
    Chains: B
    Engineered: YES
    Fragment: UNP RESIDUES 56-70
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PROTEIN EDG-2, PROTEIN G10 HOMOLOG
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1HFT1Ligand/IonHYDROXYFLUTAMIDE
2SO41Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:704 , ASN A:705 , LEU A:707 , GLN A:711 , MET A:742 , MET A:745 , VAL A:746 , MET A:749 , ARG A:752 , PHE A:764 , LEU A:873BINDING SITE FOR RESIDUE HFT A 1001
2AC2SOFTWARESER A:696 , PHE A:697 , LYS A:777 , SER A:853BINDING SITE FOR RESIDUE SO4 A 1002

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OH6)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Thr A:918 -Gln A:919

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OH6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OH6)

(-) Exons   (0, 0)

(no "Exon" information available for 4OH6)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:242
                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee.....eehhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh..eee.....hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh..eee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oh6 A 671 PIFLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSAMLYFAPDLVFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFFDELRMNYIKELDRIIASCSRRFYQLTKLLDSVQPIARELHQFAFDLLIKSHMVSVDFPEMMAEIISVQVPKILSGKVKPIYFHTQ 919
                                   680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840  ||   857       867       877       887       897       907       917  
                                                                                                                                                                                                      843|                                                                    
                                                                                                                                                                                                       851                                                                    


Chain B from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author .hhhhh... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 4oh6 B   1 YIFDLFYKR   9
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OH6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OH6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OH6)

(-) Gene Ontology  (61, 65)

Asymmetric/Biological Unit(hide GO term definitions)

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  BUD31_HUMAN | P41223
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ANDR_HUMAN | P10275: 1e3g 1gs4 1t5z 1t63 1t65 1xj7 1xow 1xq3 1z95 2am9 2ama 2amb 2ao6 2ax6 2ax7 2ax8 2ax9 2axa 2hvc 2oz7 2pio 2pip 2piq 2pir 2pit 2piu 2piv 2piw 2pix 2pkl 2pnu 2q7i 2q7j 2q7k 2q7l 2yhd 2ylo 2ylp 2ylq 2z4j 3b5r 3b65 3b66 3b67 3b68 3btr 3l3x 3l3z 3rlj 3rll 3v49 3v4a 3zqt 4hlw 4k7a 4oea 4oed 4oey 4oez 4ofr 4ofu 4ogh 4oh5 4oha 4oil 4oiu 4oj9 4ojb 4ok1 4okb 4okt 4okw 4okx 4olm 4ql8 5cj6 5jjm 5t8e 5t8j 5v8q
        BUD31_HUMAN | P41223: 4oed 4okb 5mqf

(-) Related Entries Specified in the PDB File

4oea 4oed 4oey 4oez 4ofr 4ofu 4ogh 4oh5 4oha 4oil 4oiu 4oj9 4ojb 4ok1 4okb 4okt 4okw 4okx 4olm