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(-) Description

Title :  THE STRUCTURE OF THE G. VIOLACEUS GUANIDINE II RIBOSWITCH P1 STEM-LOOP WITH GUANIDINE
 
Authors :  L. Huang, J. Wang, D. M. J. Lilley
Date :  10 Mar 17  (Deposition) - 07 Jun 17  (Release) - 05 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.91
Chains :  Asym./Biol. Unit :  A
Keywords :  Guanidine Ii Riboswitch, Stem-Loop, Tetra Loop, Dimmer, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Huang, J. Wang, D. M. J. Lilley
The Structure Of The Guanidine-Ii Riboswitch.
Cell Chem Biol V. 24 695 2017
PubMed-ID: 28529131  |  Reference-DOI: 10.1016/J.CHEMBIOL.2017.05.014

(-) Compounds

Molecule 1 - RNA (5'- R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3')
    Chains: A
    Engineered: YES
    Organism Scientific: GLOEOBACTER VIOLACEUS
    Organism Taxid: 33072
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 9)

Asymmetric/Biological Unit (4, 9)
No.NameCountTypeFull Name
1CBV1Mod. Nucleotide5-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE)
2GAI1Ligand/IonGUANIDINE
3NA6Ligand/IonSODIUM ION
4SO41Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREG A:7 , A A:8 , C A:9 , G A:10 , NA A:107binding site for residue GAI A 101
2AC2SOFTWAREG A:2 , U A:3 , C A:15 , C A:18 , NA A:108 , HOH A:201 , HOH A:203binding site for residue SO4 A 102
3AC3SOFTWAREC A:18 , HOH A:205binding site for residue NA A 103
4AC4SOFTWAREG A:1 , NA A:108 , HOH A:208binding site for residue NA A 104
5AC5SOFTWAREG A:6 , G A:7 , G A:10binding site for residue NA A 106
6AC6SOFTWAREA A:8 , GAI A:101binding site for residue NA A 107
7AC7SOFTWAREG A:2 , C A:18 , SO4 A:102 , NA A:104binding site for residue NA A 108

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5NEF)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
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Chain A from PDB  Type:RNA  Length:18
                                                 
                  5nef A  1 GGUGGGGACGACCCCAxC 18
                                    10      | 
                                           17-CBV
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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