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Sequence, Chains, Asymmetric and Biological Units

Title THE STRUCTURE OF THE G. VIOLACEUS GUANIDINE II RIBOSWITCH P1 WITH GUANIDINE
Keywords GUANIDINE II RIBOSWITCH, STEM-LOOP, TETRA LOOP, DIMER, RNA
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5NEF     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 18 552 33
2  Ligand    A 8 0 20
3 Water     33 0 33
total       59 552 86

Nucleic acids
Unit 1 G1 G2 U3 G4 G5 G6 G7 A8 C9 G10 A11 C12 C13 C14 C15 A16 CBV17 C18

Ligands
Unit 2 GAI101 SO4102 NA103 NA104 NA105 NA106 NA107 NA108

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany