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(-) Description

Title :  STRUCTURE OF RPA70N IN COMPLEX WITH PRIMPOL (FRAGMENT 514-525)
 
Authors :  N. C. Brissett, A. J. Doherty
Date :  23 Feb 17  (Deposition) - 07 Jun 17  (Release) - 07 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Complex, Replication, Basic Cleft, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. A. Guilliam, N. C. Brissett, A. Ehlinger, B. A. Keen, P. Kolesar, E. M. Taylor, L. J. Bailey, H. D. Lindsay, W. J. Chazin, A. J. Doherty
Molecular Basis For Primpol Recruitment To Replication Fork By Rpa.
Nat Commun V. 8 15222 2017
PubMed-ID: 28534480  |  Reference-DOI: 10.1038/NCOMMS15222

(-) Compounds

Molecule 1 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET15B
    Expression System Vector Type: PLASMID
    Gene: RPA1, REPA1, RPA70
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: RP-A P70,REPLICATION FACTOR A PROTEIN 1,RF-A PROTEIN 1, SINGLE-STRANDED DNA-BINDING PROTEIN
 
Molecule 2 - DNA-DIRECTED PRIMASE/POLYMERASE PROTEIN
    Chains: B
    EC Number: 2.7.7.-
    Engineered: YES
    Fragment: UNP RESIDUES 514-528
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HPRIMPOL1,COILED-COIL DOMAIN-CONTAINING PROTEIN 111
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5N85)

(-) Sites  (0, 0)

(no "Site" information available for 5N85)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5N85)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5N85)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5N85)

(-) Exons   (0, 0)

(no "Exon" information available for 5N85)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:121
                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh..hhhhhhhhhh......eeeeeeeeee.......eeeeeee...eeeeeeee...hhhhhhh.......eeeeeeeeeee.....eeeeeeeeeeeehhhhhh......ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------- Transcript
                 5n85 A   0 HMVGQLSRGAIAAIMQKGDTNIKPILQVINIRPITTGNSPPRYRLLMSDGLNTLSSFMLATQLNPLVEEEQLSSNCVCQIHRFIVNTLKDGRRVVILMELEVLKSAEAVGVKIGNPVPYNE 120
                                     9        19        29        39        49        59        69        79        89        99       109       119 


Chain B from PDB  Type:PROTEIN  Length:12
                                            
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author ....hhhhh... Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                 5n85 B   1 DNGIDDAYFLEA  12
                                    10
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5N85)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5N85)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5N85)

(-) Gene Ontology  (52, 58)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PRIPO_HUMAN | Q96LW4: 5l2x 5n8a
        RFA1_HUMAN | P27694: 1ewi 1fgu 1jmc 1l1o 2b29 2b3g 4ijh 4ijl 4ipc 4ipd 4ipg 4iph 4luo 4luv 4luz 4lw1 4lwc 4nb3 4o0a 4r4c 4r4i 4r4o 4r4q 4r4t 5e7n 5eay 5n8a

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5N85)