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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN MONOAMINE OXIDASE B (MAO B) IN COMPLEX WITH N(FURAN2YLMETHYL)NMETHYLPROP2YN1AMINE (F2MPA)
 
Authors :  C. Binda, P. De Deurwaerdere, R. Corne, C. Leone, A. Valeri, M. Valoti, R. R. Ramsay, Y. Fall, J. Marco-Contelles
Date :  23 Dec 16  (Deposition) - 11 Jan 17  (Release) - 24 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.42
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Monoamine Oxidase, Neurodegeneration, Inhibitor, Enzyme, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. De Deurwaerdere, C. Binda, R. Corne, C. Leone, A. Valeri, M. Valoti R. R. Ramsay, Y. Fall, J. Marco-Contelles
Comparative Analysis Of The Neurochemical Profile And Mao Inhibition Properties Of N-(Furan-2-Ylmethyl)-N-Methylprop-2-Yn-1-Amine.
Acs Chem Neurosci V. 8 1026 2017
PubMed-ID: 27977122  |  Reference-DOI: 10.1021/ACSCHEMNEURO.6B00377

(-) Compounds

Molecule 1 - AMINE OXIDASE [FLAVIN-CONTAINING] B
    Chains: A, B
    EC Number: 1.4.3.4
    Engineered: YES
    Expression System: KOMAGATAELLA PASTORIS
    Expression System Taxid: 4922
    Gene: MAOB
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MONOAMINE OXIDASE TYPE B,MAO-B

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1F2M2Ligand/Ion(~{E})-~{N}-(FURAN-2-YLMETHYL)-~{N}-METHYL-PROP-1-EN-1-AMINE
2FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:11 , GLY A:13 , ILE A:14 , SER A:15 , LEU A:33 , GLU A:34 , ALA A:35 , ARG A:36 , GLY A:40 , GLY A:41 , ARG A:42 , THR A:43 , GLY A:57 , GLY A:58 , SER A:59 , TYR A:60 , LEU A:171 , GLN A:206 , VAL A:235 , ALA A:263 , ILE A:264 , TRP A:388 , TYR A:393 , CYS A:397 , TYR A:398 , GLY A:425 , THR A:426 , GLY A:434 , TYR A:435 , MET A:436 , ALA A:439 , HOH A:710 , HOH A:717 , HOH A:722 , HOH A:723 , HOH A:747 , HOH A:751 , HOH A:776binding site for residues FAD A 600 and F2M A 601
2AC2SOFTWAREVAL B:10 , GLY B:11 , GLY B:13 , ILE B:14 , SER B:15 , LEU B:33 , GLU B:34 , ALA B:35 , ARG B:36 , GLY B:40 , GLY B:41 , ARG B:42 , GLY B:58 , SER B:59 , TYR B:60 , LEU B:171 , ILE B:198 , GLN B:206 , VAL B:235 , ALA B:263 , ILE B:264 , TYR B:326 , TRP B:388 , TYR B:393 , CYS B:397 , TYR B:398 , GLY B:425 , THR B:426 , GLY B:434 , TYR B:435 , MET B:436 , ALA B:439 , HOH B:706 , HOH B:709 , HOH B:725 , HOH B:732 , HOH B:740 , HOH B:745 , HOH B:768 , HOH B:807binding site for residues FAD B 600 and F2M B 601
3AC3SOFTWAREVAL B:10 , GLY B:11 , GLY B:13 , ILE B:14 , SER B:15 , LEU B:33 , GLU B:34 , ALA B:35 , ARG B:36 , GLY B:40 , GLY B:41 , ARG B:42 , GLY B:58 , SER B:59 , TYR B:60 , THR B:174 , VAL B:235 , ALA B:263 , ILE B:264 , GLY B:292 , SER B:293 , VAL B:294 , TRP B:388 , TYR B:393 , GLY B:396 , TYR B:398 , THR B:399 , GLY B:425 , THR B:426 , GLY B:434 , TYR B:435 , MET B:436 , ALA B:439 , F2M B:601 , HOH B:706 , HOH B:709 , HOH B:725 , HOH B:732 , HOH B:740 , HOH B:745 , HOH B:768 , HOH B:807binding site for Di-peptide FAD B 600 and CYS B 397

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5MRL)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Asn A:275 -Pro A:276
2Cys A:397 -Tyr A:398
3Asn B:275 -Pro B:276
4Cys B:397 -Tyr B:398

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5MRL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5MRL)

(-) Exons   (0, 0)

(no "Exon" information available for 5MRL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:499
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee..hhhhhhhhhhhhhh...eeee...........ee.......ee.........hhhhhhhhhhh...eee.....eeeeee..eeeee........hhhhhhhhhhhhhhhhhhhhh....hhhhh.hhhhhhh.hhhhhhhhhh.hhhhhhhhhhhhhhhhh......hhhhhhhhhhhh.hhhhhhh.......eee...hhhhhhhhhhhhh..ee....eeeee.....eeeee....eeee.eeee..hhhhhhhheee...hhhhhhhh.......eeeeeee...hhhhhh.eeeeeee........eeee.........eeeeeeehhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh..eeeeee.hhh.............hhhhhhhhhh......eee.hhhhh.....hhhhhhhhhhhhhhhhhhhh...hhhhh.................hhhhhhh.hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5mrl A   3 NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILHAMGKIPEDEIWQSEPESVDVPAQPITTTFLERHLPSVPGLLRLIGLTTI 501
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492         


Chain B from PDB  Type:PROTEIN  Length:494
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee..hhhhhhhhhhhhhh...eeee...........eeee...eeee....ee...hhhhhhhhhhh...eee.....eeeeee..eeeee........hhhhhhhhhhhhhhhhhhhh.....hhhhh.hhhhhhh.hhhhhhhhhh.hhhhhhhhhhhhhhhhh......hhhhhhhhhhhh.hhhhhhh.......eee...hhhhhhhhhhhhh..ee....eeeee.....eeeee....eeee.eeee..hhhhhhhheee...hhhhhhhh.......eeeeeee...hhhhhh.eeeeeee........eeee.........eeeeeeehhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh..eeeeee.hhh.............hhhhhhhhhh......eee.hhhhh.....hhhhhhhhhhhhhhhhhhhh...hhhhh.................hhhhhhh.hhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5mrl B   3 NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILHAMGKIPEDEIWQSEPESVDVPAQPITTTFLERHLPSVPGLLRLI 496
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5MRL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5MRL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5MRL)

(-) Gene Ontology  (26, 26)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asn A:275 - Pro A:276   [ RasMol ]  
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    Cys A:397 - Tyr A:398   [ RasMol ]  
    Cys B:397 - Tyr B:398   [ RasMol ]  
 

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  5mrl
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  AOFB_HUMAN | P27338
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  1.4.3.4
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 Related Entries

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UniProtKB/Swiss-Prot
        AOFB_HUMAN | P27338: 1gos 1h8r 1oj9 1oja 1ojc 1ojd 1s2q 1s2y 1s3b 1s3e 2bk3 2bk4 2bk5 2byb 2c64 2c65 2c66 2c67 2c70 2c72 2c73 2c75 2c76 2v5z 2v60 2v61 2vrl 2vrm 2vz2 2xcg 2xfn 2xfo 2xfp 2xfq 2xfu 3po7 3zyx 4a79 4a7a 4crt

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