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Theoretical Model  (Jmol Viewer)

(-) Description

Title :  HUMAN MONOAMINE OXIDASE TYPE B (TRUNCATED)
 
Authors :  J. Wouters, N. Leonard, C. Lambert, E. Depiereux
Date :  15 Feb 01  (Deposition) - 16 Feb 01  (Release) - 16 Feb 01  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A
Keywords :  Oxidoreductase, Fad-Containing Amine Oxidase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. Wouters, N. Leonard, C. Lambert, E. Depiereux
Structure Of Human Mao Type A And B
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - AMINE OXIDASE B
    ChainsA
    EC Number1.4.3.4
    FragmentSOLUBLE DOMAIN RESIDUES 5-459
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Other DetailsTHIOETHER LINK BETWEEN SG OF CYS 397 AND C8M OF FAD COFACTOR
    Other Details - SourceMITOCHONDRIAL OUTER MEMBRANE
    SynonymMONOAMINE OXIDASE TYPE B, MAOB

 Structural Features

(-) Chains, Units

  
Theoretical Model 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Theoretical Model (1, 1)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE

(-) Sites  (0, 0)

(no "Site" information available for 1H8R)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1H8R)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1H8R)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1H8R)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1H8R)

(-) Exons   (14, 14)

Theoretical Model (14, 14)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000003780691aENSE00001476175X:43741693-43741500194AOFB_HUMAN1-16161A:5-1612
1.4ENST000003780694ENSE00000847672X:43703010-4370291695AOFB_HUMAN16-47321A:16-4732
1.5ENST000003780695ENSE00000386774X:43698251-43698114138AOFB_HUMAN48-93461A:48-9346
1.6ENST000003780696ENSE00001035779X:43662651-43662547105AOFB_HUMAN94-128351A:94-12835
1.7ENST000003780697ENSE00001035776X:43661510-4366141992AOFB_HUMAN129-159311A:129-15931
1.8bENST000003780698bENSE00001035764X:43656513-43656372142AOFB_HUMAN159-206481A:159-20648
1.9ENST000003780699ENSE00001035777X:43655135-43654986150AOFB_HUMAN207-256501A:207-25650
1.10ENST0000037806910ENSE00001035772X:43652825-43652666160AOFB_HUMAN257-310541A:257-31054
1.11ENST0000037806911ENSE00001035775X:43640791-4364069597AOFB_HUMAN310-342331A:310-34233
1.12ENST0000037806912ENSE00001035768X:43639642-4363958954AOFB_HUMAN342-360191A:342-36019
1.13ENST0000037806913ENSE00001035781X:43637986-4363792958AOFB_HUMAN360-379201A:360-37920
1.14ENST0000037806914ENSE00001700569X:43634519-4363442298AOFB_HUMAN380-412331A:380-41233
1.15aENST0000037806915aENSE00001712216X:43628665-43628554112AOFB_HUMAN412-449381A:412-44938
1.16ENST0000037806916ENSE00000668638X:43627963-4362790163AOFB_HUMAN450-470211A:450-45910
1.17bENST0000037806917bENSE00001332403X:43626865-436258581008AOFB_HUMAN471-520500--

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:455
 aligned with AOFB_HUMAN | P27338 from UniProtKB/Swiss-Prot  Length:520

    Alignment length:455
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454     
           AOFB_HUMAN     5 CDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILHAMGKIPE 459
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee..hhhhhhhhhhhhhhh....eee..........eeee...eeee....ee...........hhhhhhhhh..eeee..................hhhhhhhhhhhhhhhhhhh..............hhhhhh...........hhhhhhhhhhhhhhhhh.hhhh.hhhhhh.hhhhhhh...eeee....hhhhhhhhhhh..............eee...eeeee.....eeeee.....eee..eeee.hhhhhh..ee....hhhhhhhhhh..ee..eeeeee.............eee.........eeee.........eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh.........eee.............ee.......hhhhhhhhhh....eeee..........hhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1a   -------------------------------Exon 1.5  PDB: A:48-93 UniProt: 48-93         Exon 1.6  PDB: A:94-128            Exon 1.7  PDB: A:129-159       -----------------------------------------------Exon 1.9  PDB: A:207-256 UniProt: 207-256         Exon 1.10  PDB: A:257-310 UniProt: 257-310            -------------------------------Exon 1.12          -------------------Exon 1.14  PDB: A:380-412        -------------------------------------Exon 1.16  Transcript 1 (1)
           Transcript 1 (2) -----------Exon 1.4  PDB: A:16-47          ---------------------------------------------------------------------------------------------------------------Exon 1.8b  PDB: A:159-206 UniProt: 159-206      -------------------------------------------------------------------------------------------------------Exon 1.11  PDB: A:310-342        -----------------Exon 1.13           --------------------------------Exon 1.15a  PDB: A:412-449            ---------- Transcript 1 (2)
                 1h8r A   5 CDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILHAMGKIPE 459
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454     

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1H8R)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1H8R)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1H8R)

(-) Gene Ontology  (26, 26)

Theoretical Model(hide GO term definitions)
Chain A   (AOFB_HUMAN | P27338)
molecular function
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0050660    flavin adenine dinucleotide binding    Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0008131    primary amine oxidase activity    Catalysis of the reaction: a primary amine + H2O + O2 = an aldehyde + NH3 + hydrogen peroxide.
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
biological process
    GO:0042420    dopamine catabolic process    The chemical reactions and pathways resulting in the breakdown of dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline.
    GO:0050665    hydrogen peroxide biosynthetic process    The chemical reactions and pathways resulting in the formation of hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA.
    GO:0014063    negative regulation of serotonin secretion    Any process that stops, prevents, or reduces the frequency, rate or extent of the regulated release of serotonin.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0045964    positive regulation of dopamine metabolic process    Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving dopamine.
    GO:0010044    response to aluminum ion    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an aluminum ion stimulus.
    GO:0051412    response to corticosterone    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a corticosterone stimulus. Corticosterone is a 21 carbon steroid hormone of the corticosteroid type, produced in the cortex of the adrenal glands. In many species, corticosterone is the principal glucocorticoid, involved in regulation of fuel metabolism, immune reactions, and stress responses.
    GO:0042493    response to drug    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
    GO:0045471    response to ethanol    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus.
    GO:0032496    response to lipopolysaccharide    Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria.
    GO:0010269    response to selenium ion    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from selenium ion.
    GO:0048545    response to steroid hormone    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a steroid hormone stimulus.
    GO:0009636    response to toxic substance    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxic stimulus.
    GO:0021762    substantia nigra development    The progression of the substantia nigra over time from its initial formation until its mature state. The substantia nigra is the layer of gray substance that separates the posterior parts of the cerebral peduncles (tegmentum mesencephali) from the anterior parts; it normally includes a posterior compact part with many pigmented cells (pars compacta) and an anterior reticular part whose cells contain little pigment (pars reticularis).
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005740    mitochondrial envelope    The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005741    mitochondrial outer membrane    The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AOFB_HUMAN | P273381gos 1oj9 1oja 1ojc 1ojd 1s2q 1s2y 1s3b 1s3e 2bk3 2bk4 2bk5 2byb 2c64 2c65 2c66 2c67 2c70 2c72 2c73 2c75 2c76 2v5z 2v60 2v61 2vrl 2vrm 2vz2 2xcg 2xfn 2xfo 2xfp 2xfq 2xfu 3po7 3zyx 4a79 4a7a 4crt 5mrl

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1H8R)