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(-) Description

Title :  CRYSTAL STRUCTURE OF THE HETEROTRIMERIC INTEGRIN-BINDING REGION OF LAMININ-111
 
Authors :  D. Pulido, E. Hohenester
Date :  09 Nov 16  (Deposition) - 08 Feb 17  (Release) - 22 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.13
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Extracellular Matrix, Cell Adhesion, Coiled Coil, Laminin G-Like Domain (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Pulido, S. A. Hussain, E. Hohenester
Crystal Structure Of The Heterotrimeric Integrin-Binding Region Of Laminin-111.
Structure V. 25 530 2017
PubMed-ID: 28132784  |  Reference-DOI: 10.1016/J.STR.2017.01.002

(-) Compounds

Molecule 1 - LAMININ SUBUNIT ALPHA-1
    Chains: A
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK293F
    Expression System Taxid: 9606
    Fragment: UNP RESIDUES 2079-2707
    Gene: LAMA1, LAMA, LAMA-1
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Other Details: MOUSE LAMININ ALPHA1 CHAIN, RESIDUES WITH DISORDERED SIDE CHAINS ARE ALANINE
    Synonym: LAMININ A CHAIN,LAMININ-1 SUBUNIT ALPHA,LAMININ-3 SUBUNIT ALPHA,S-LAMININ SUBUNIT ALPHA,S-LAM ALPHA
 
Molecule 2 - LAMININ SUBUNIT BETA-1
    Chains: B
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK293F
    Expression System Taxid: 9606
    Fragment: UNP RESIDUES 1735-1786
    Gene: LAMB1, LAMB-1, LAMB1-1
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Other Details: MOUSE LAMININ BETA1 CHAIN, RESIDUES WITH DISORDERED SIDE CHAINS ARE ALANINE
    Synonym: LAMININ B1 CHAIN,LAMININ-1 SUBUNIT BETA,LAMININ-10 SUBUNIT BETA,LAMININ-12 SUBUNIT BETA,LAMININ-2 SUBUNIT BETA,LAMININ-6 SUBUNIT BETA,LAMININ-8 SUBUNIT BETA
 
Molecule 3 - LAMININ SUBUNIT GAMMA-1
    Chains: C
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK293F
    Expression System Taxid: 9606
    Fragment: UNP RESIDUES 1548-1607
    Gene: LAMC1, LAMB-2, LAMC-1
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Other Details: MOUSE LAMININ GAMMA1 CHAIN, RESIDUES WITH DISORDERED SIDE CHAINS ARE ALANINE
    Synonym: LAMININ B2 CHAIN,LAMININ-1 SUBUNIT GAMMA,LAMININ-10 SUBUNIT GAMMA,LAMININ-11 SUBUNIT GAMMA,LAMININ-2 SUBUNIT GAMMA,LAMININ-3 SUBUNIT GAMMA,LAMININ-4 SUBUNIT GAMMA,LAMININ-6 SUBUNIT GAMMA, LAMININ-7 SUBUNIT GAMMA,LAMININ-8 SUBUNIT GAMMA,LAMININ-9 SUBUNIT GAMMA,S-LAMININ SUBUNIT GAMMA,S-LAM GAMMA

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:2173 , LEU A:2190 , VAL A:2247 , ASP A:2249 , HOH A:9225 , HOH A:9308binding site for residue CA A 9001
2AC2SOFTWAREASP A:2360 , LEU A:2377 , ASP A:2433 , ASN A:2435 , HOH A:9149 , HOH A:9339binding site for residue CA A 9002

(-) SS Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1A:2134 -A:2302
2A:2653 -A:2680
3B:1785 -C:1598

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5MC9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5MC9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5MC9)

(-) Exons   (0, 0)

(no "Exon" information available for 5MC9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:597
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee...eeee........eeeeeeeee.....eeeeeee......eeeeeee..eeeeeee....eeeeee..........eeeeeeee..eeeeeeee.........eeee..............eee...................eeee...ee..ee.......eee...eee..........eeeeeeeeeee.......eeeeeeeee.....eeeeee.......eeeeeee..eeeeeee....eeeee..........eeeeeeee..eeeeeeee..eeeeeeeeeee...............eee..................eeeeeeeee..ee......eeeeee........eeeeeeeeeeee.........eeeeeeee....eeeeeee.......eeeeeee..eeeeeee.......eeeee............eeeeeeee..eeeeee.....eeee.hhhhh.......eeee...................eeeeeeee..ee.hhhhh.eeeeeee.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5mc9 A 2083 EMQANLLLDRLKPLKTLEENLSRNLSEIKLLISRARKQAASIKVAVSADRDCIRAYQPQTSSTNYNTLILNVKTQEPDNLLFYLGSSSSSDFLAVEMRRGKVAFLWDLGSGSTRLEFPEVSINNNRWHSIYITRFGNMGSLSVKEASAAENPPVRTSKSPGPSKVLDINNSTLMFVGGLGGQIKKSPAVKVTHFKGCMGEAFLNGKSIGLWNYIEREGKCNGCFGSSQNEDSSFHFDGSGYAMVEKTLRPTVTQIVILFSTFSPNGLLFYLASNGTKDFLSIELVRGRVKVMVDLGSGPLTLMTDRRYNNGTWYKIAFQRNRKQGLLAVFDAYDTSDKETKQGETPGAASDLNRLEKDLIYVGGLPHSKAVRKGVSSRSYVGCIKNLEISRSTFDLLRNSYGVRKGCALEPIQSVSFLRGGYVEMPPKSLSPESSLLATFATKNSSGILLVALGKDAHVPFFSIMLLEGRIEVHVNSGDGTSLRKALLHAPTGSYSDGQEHSISLVRNRRVITIQVDENSPVEMKLGPLTEGKTIDISNLYIGGLPEDKATPMLKMRTSFHGCIKNVVLDAQLLDFTHATGSEQVELDTCLLAEEPM 2687
                                  2092      2102      2112      2122      2132      2142      2152      2162      2172      2182      2192      2202      2212      2222      2232      2242      2252      2262      2272      2282      2292      2302      2312      2322      2332      2342      2352      2362      2372      2382      2392      2402      2412      2422      2432      2442      2452      2462      2472      2482      2492      2502      2512      2522      2532     |2550      2560      2570      2580      2590      2600      2610      2620      2630      2640      2650      2660      2670      2680       
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                2538|                                                                                                                                            
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 2547                                                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:51
                                                                                    
               SCOP domains --------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------- Transcript
                5mc9 B 1736 KLQLLEDLERKYEDNQKYLEDKAQELVRLEGEVRSLLKDISEKVAVYSTCL 1786
                                  1745      1755      1765      1775      1785 


Chain C from PDB  Type:PROTEIN  Length:53
                                                                                      
               SCOP domains ----------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------- Transcript
                5mc9 C 1553 DRKVSDLESEARKQEAAIMDYNRDIAEIIKDIHNLEDIKKTLPTGCFNTPSIE 1605
                                  1562      1572      1582      1592      1602
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5MC9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5MC9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5MC9)

(-) Gene Ontology  (48, 81)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/Swiss-Prot
        LAMA1_MOUSE | P19137: 2jd4
        LAMB1_MOUSE | P02469: 4aqs
        LAMC1_MOUSE | P02468: 1klo 1npe 1tle 4aqt

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