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(-) Description

Title :  CRYSTAL STRUCTURE OF THREE CONSECUTIVE LAMININ-TYPE EPIDERMAL GROWTH FACTOR-LIKE (LE) MODULES OF LAMININ GAMMA1 CHAIN HARBORING THE NIDOGEN BINDING SITE
 
Authors :  J. Stetefeld, U. Mayer, R. Timpl, R. Huber
Date :  02 Feb 96  (Deposition) - 20 Aug 97  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Glycoprotein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. Stetefeld, U. Mayer, R. Timpl, R. Huber
Crystal Structure Of Three Consecutive Laminin-Type Epidermal Growth Factor-Like (Le) Modules Of Laminin Gamma1 Chain Harboring The Nidogen Binding Site.
J. Mol. Biol. V. 257 644 1996
PubMed-ID: 8648630  |  Reference-DOI: 10.1006/JMBI.1996.0191
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - LAMININ
    ChainsA
    FragmentGAMMA-1 CHAIN, THREE CONSECUTIVE LAMININ-TYPE EPIDERMAL GROWTH FACTOR-LIKE (LE) MODULES
    Organism CommonHOUSE MOUSE
    Organism ScientificMUS MUSCULUS
    Organism Taxid10090

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (4x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1KLO)

(-) Sites  (0, 0)

(no "Site" information available for 1KLO)

(-) SS Bonds  (12, 12)

Asymmetric Unit
No.Residues
1A:11 -A:19
2A:13 -A:30
3A:33 -A:42
4A:45 -A:63
5A:66 -A:80
6A:68 -A:87
7A:90 -A:99
8A:102 -A:119
9A:122 -A:136
10A:124 -A:143
11A:145 -A:154
12A:157 -A:170

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1KLO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1KLO)

(-) PROSITE Motifs  (3, 7)

Asymmetric Unit (3, 7)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EGF_LAM_2PS50027 Laminin-type EGF-like (LE) domain profile.LAMC1_MOUSE284-329
340-395
396-442
443-492
722-770
771-825
826-881
882-932
933-980
981-1028
  3-
-
-
-
-
A:11-65
A:66-121
A:122-172
-
-
2EGF_1PS00022 EGF-like domain signature 1.LAMC1_MOUSE303-314
414-425
461-472
688-699
738-749
903-914
952-963
999-1010
  1-
-
-
-
-
A:143-154
-
-
3EGF_LAM_1PS01248 Laminin-type EGF-like (LE) domain signature.LAMC1_MOUSE365-398
414-445
461-495
688-722
738-773
790-826
847-882
903-935
952-983
999-1032
  3-
-
-
-
-
A:30-66
A:87-122
A:143-172
-
-
Biological Unit 1 (3, 28)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EGF_LAM_2PS50027 Laminin-type EGF-like (LE) domain profile.LAMC1_MOUSE284-329
340-395
396-442
443-492
722-770
771-825
826-881
882-932
933-980
981-1028
  12-
-
-
-
-
A:11-65
A:66-121
A:122-172
-
-
2EGF_1PS00022 EGF-like domain signature 1.LAMC1_MOUSE303-314
414-425
461-472
688-699
738-749
903-914
952-963
999-1010
  4-
-
-
-
-
A:143-154
-
-
3EGF_LAM_1PS01248 Laminin-type EGF-like (LE) domain signature.LAMC1_MOUSE365-398
414-445
461-495
688-722
738-773
790-826
847-882
903-935
952-983
999-1032
  12-
-
-
-
-
A:30-66
A:87-122
A:143-172
-
-

(-) Exons   (0, 0)

(no "Exon" information available for 1KLO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:162
 aligned with LAMC1_MOUSE | P02468 from UniProtKB/Swiss-Prot  Length:1607

    Alignment length:162
                                   780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930  
          LAMC1_MOUSE   771 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQGCER 932
               SCOP domains d1kloa1 A:11-65 Laminin gamma1 chain                   d1kloa2 A:66-121 Laminin gamma1 chain                   d1kloa3 A:122-172 Laminin gamma1 chain              SCOP domains
               CATH domains 1kloA01 A:11-63 Laminin                              1kloA02 A:64-119 Laminin                                1kloA03 A:120-172 Laminin                             CATH domains
           Pfam domains (1) ---------------------------------------------------------------------------------------------------------------Laminin_EGF-1kloA01 A:122-170                    -- Pfam domains (1)
           Pfam domains (2) ---------------------------------------------------------------------------------------------------------------Laminin_EGF-1kloA02 A:122-170                    -- Pfam domains (2)
           Pfam domains (3) ---------------------------------------------------------------------------------------------------------------Laminin_EGF-1kloA03 A:122-170                    -- Pfam domains (3)
         Sec.struct. author ........eeee....eeee...........................................................................eee......hhhheee........hhh...............................hhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) EGF_LAM_2  PDB: A:11-65 UniProt: 771-825               EGF_LAM_2  PDB: A:66-121 UniProt: 826-881               EGF_LAM_2  PDB: A:122-172 UniProt: 882-932          PROSITE (1)
                PROSITE (2) EGF----------------EGF_LAM_1  PDB: A:30-66              --------------------EGF_LAM_1  PDB: A:87-122            --------------------EGF_1       ------------------ PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------------------------------------------------------------------EGF_LAM_1  PDB: A:143-172      PROSITE (3)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1klo A  11 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQGCER 172
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit

(-) CATH Domains  (1, 3)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 3)

Asymmetric Unit
(-)
Clan: EGF (60)

(-) Gene Ontology  (19, 19)

Asymmetric Unit(hide GO term definitions)
Chain A   (LAMC1_MOUSE | P02468)
molecular function
    GO:0005201    extracellular matrix structural constituent    The action of a molecule that contributes to the structural integrity of the extracellular matrix.
    GO:0043208    glycosphingolipid binding    Interacting selectively and non-covalently with glycosphingolipid, a compound with residues of sphingoid and at least one monosaccharide.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0007411    axon guidance    The chemotaxis process that directs the migration of an axon growth cone to a specific target site in response to a combination of attractive and repulsive cues.
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
    GO:0016477    cell migration    The controlled self-propelled movement of a cell from one site to a destination guided by molecular cues. Cell migration is a central process in the development and maintenance of multicellular organisms.
    GO:0022617    extracellular matrix disassembly    A process that results in the breakdown of the extracellular matrix.
    GO:0030198    extracellular matrix organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an extracellular matrix.
    GO:0031581    hemidesmosome assembly    Assembly of hemidesmosomes, integrin-containing protein complexes that bind to laminin in the basal lamina. Hemidesmosomes form the contact between the basal surface of epithelial cells and the underlying basal lamina.
    GO:0031175    neuron projection development    The process whose specific outcome is the progression of a neuron projection over time, from its formation to the mature structure. A neuron projection is any process extending from a neural cell, such as axons or dendrites (collectively called neurites).
    GO:0006461    protein complex assembly    The aggregation, arrangement and bonding together of a set of components to form a protein complex.
    GO:0034446    substrate adhesion-dependent cell spreading    The morphogenetic process that results in flattening of a cell as a consequence of its adhesion to a substrate.
cellular component
    GO:0005605    basal lamina    A thin sheet of proteoglycans and glycoproteins, especially laminin, secreted by cells as an extracellular matrix.
    GO:0005604    basement membrane    A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0031012    extracellular matrix    A structure lying external to one or more cells, which provides structural support for cells or tissues.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0043259    laminin-10 complex    A laminin complex composed of alpha5, beta1 and gamma1 polypeptide chains.
    GO:0005578    proteinaceous extracellular matrix    A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LAMC1_MOUSE | P024681npe 1tle 4aqt 5mc9

(-) Related Entries Specified in the PDB File

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