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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF AA13 LPMO
 
Authors :  K. E. H. Frandsen, J. -C. N. Poulsen, M. Tovborg, K. S. Johansen, L. Lo Le
Date :  05 Sep 16  (Deposition) - 18 Jan 17  (Release) - 18 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Enzyme, Aspergillus Oryzae Aa13 Lpmo, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. E. Frandsen, J. C. Poulsen, M. Tovborg, K. S. Johansen, L. Lo Leggio
Learning From Oligosaccharide Soaks Of Crystals Of An Aa13 Lytic Polysaccharide Monooxygenase: Crystal Packing, Ligand Binding And Active-Site Disorder.
Acta Crystallogr D Struct V. 73 64 2017 Biol
PubMed-ID: 28045386  |  Reference-DOI: 10.1107/S2059798316019641

(-) Compounds

Molecule 1 - AOAA13
    Chains: A
    Engineered: YES
    Expression System: ASPERGILLUS ORYZAE RIB40
    Expression System Taxid: 510516
    Gene: AO090701000246
    Organism Common: YELLOW KOJI MOLD
    Organism Scientific: ASPERGILLUS ORYZAE RIB40
    Organism Taxid: 510516

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 12)

Asymmetric/Biological Unit (4, 12)
No.NameCountTypeFull Name
1GLC2Ligand/IonALPHA-D-GLUCOSE
2HIC1Mod. Amino Acid4-METHYL-HISTIDINE
3NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
4ZN8Ligand/IonZINC ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIC A:1 , GLY A:89 , HIS A:91 , GLN A:222 , TYR A:224 , HOH A:619binding site for residue ZN A 404
02AC2SOFTWAREASP A:36 , ASP A:38 , LYS A:200 , GLU A:203 , HOH A:722 , HOH A:731binding site for residue ZN A 405
03AC3SOFTWAREASP A:102 , SER A:104 , HOH A:562 , HOH A:615 , HOH A:701 , HOH A:749binding site for residue ZN A 406
04AC4SOFTWAREHIS A:15 , GLU A:16 , GLU A:29 , GLN A:222 , HOH A:541 , HOH A:776binding site for residue ZN A 407
05AC5SOFTWAREGLU A:153 , HOH A:538 , HOH A:755 , HOH A:757 , HOH A:760 , HOH A:801binding site for residue ZN A 408
06AC6SOFTWARESER A:74 , GLN A:233 , HOH A:742 , HOH A:746 , HOH A:756 , HOH A:764binding site for residue ZN A 409
07AC7SOFTWAREHIS A:87 , GLU A:142 , HOH A:543binding site for residue ZN A 410
08AC8SOFTWAREGLN A:219 , HOH A:595 , HOH A:623 , HOH A:626binding site for residue ZN A 411
09AC9SOFTWARETHR A:136 , TYR A:145 , ASN A:158 , GLN A:175 , ASN A:179 , THR A:205 , SER A:206 , ASN A:207 , HOH A:507 , HOH A:522 , HOH A:569 , HOH A:584 , HOH A:650 , HOH A:669 , HOH A:677 , HOH A:693 , HOH A:809binding site for Mono-Saccharide NAG A 401 bound to ASN A 207
10AD1SOFTWARETHR A:136 , TYR A:145 , ASN A:158 , GLN A:175 , ASN A:179 , THR A:205 , SER A:206 , ASN A:207 , HOH A:507 , HOH A:522 , HOH A:569 , HOH A:584 , HOH A:650 , HOH A:669 , HOH A:677 , HOH A:693 , HOH A:809binding site for Mono-Saccharide NAG A 401 bound to ASN A 207
11AD2SOFTWARESER A:21 , VAL A:31 , SER A:32 , SER A:33 , ARG A:53 , SER A:188 , PHE A:218 , GLN A:219 , THR A:220 , GLY A:221 , HOH A:504 , HOH A:506 , HOH A:525 , HOH A:550 , HOH A:602 , HOH A:618 , HOH A:639 , HOH A:670 , HOH A:750binding site for Poly-Saccharide residues GLC A 402 through GLC A 403

(-) SS Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1A:22 -A:25
2A:48 -A:227
3A:84 -A:185
4A:100 -A:127
5A:135 -A:143
6A:149 -A:155
7A:163 -A:174

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Ile A:6 -Pro A:7
2Glu A:29 -Pro A:30
3Trp A:34 -Pro A:35

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LSV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LSV)

(-) Exons   (0, 0)

(no "Exon" information available for 5LSV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:233
                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhh....hhhhh...............hhhhh...ee....ee.............eee....eeeeeeeee.......eeeeee..hhhhhhhhh......hhhhhhhhhhhhhhh..hhhhh......................ee.............................eeeeeeeee.....eeeeeeeeeee......eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lsv A   1 hGYMYIPSSRTRLGHEAGIDSCPECAILEPVSSWPDLDAAPVGRSGPCGYNARDSIDYNQPTTNWGSDAVQSYSPGEEIEVQWCVDHNGDHGGMFTYRICQDQSIVDKFLDPSYLPTNDEKQAAEDCFDAGLLPCTDVSGQECGYSADCTEGEACWRNDWFTCNGFEASDRPKCQGVDNAELNSCYTSIAGGYTVTKKVKLPEYTSNHTLISFKWNSFQTGQIYLSCADIAIQ 233
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230   
                            |                                                                                                                                                                                                                                        
                            1-HIC
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LSV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LSV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LSV)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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        Q2U8Y3_ASPOR | Q2U8Y3: 4opb 5t7j 5t7k 5t7n

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