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(-) Description

Title :  AA13 LYTIC POLYSACCHARIDE MONOOXYGENASE FROM ASPERGILLUS ORYZAE
 
Authors :  L. Lo Leggio, K. H. Frandsen, G. J. Davies, P. Dupree, P. Walton, B. Henr M. Stringer, M. Tovborg, L. De Maria, K. S. Johansen
Date :  05 Feb 14  (Deposition) - 28 Jan 15  (Release) - 04 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Lo Leggio, T. J. Simmons, J. C. Poulsen, K. E. Frandsen, G. R. Hemsworth, M. A. Stringer, P. Von Freiesleben, M. Tovborg, K. S. Johansen, L. De Maria, P. V. Harris, C. L. Soong, P. Dupree, T. Tryfona, N. Lenfant, B. Henrissat, G. J. Davies, P. H. Walton
Structure And Boosting Activity Of A Starch-Degrading Lytic Polysaccharide Monooxygenase.
Nat Commun V. 6 5961 2015
PubMed-ID: 25608804  |  Reference-DOI: 10.1038/NCOMMS6961

(-) Compounds

Molecule 1 - PREDICTED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ASPERGILLUS ORYZAE
    Expression System Taxid: 5062
    Fragment: UNP RESIDUES 47-279
    Gene: AO090701000246
    Organism Common: YELLOW KOJI MOLD
    Organism Scientific: ASPERGILLUS ORYZAE
    Organism Taxid: 510516
    Strain: ATCC 42149 / RIB 40

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 18)

Asymmetric/Biological Unit (7, 18)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2CU1Ligand/IonCOPPER (II) ION
3GOL7Ligand/IonGLYCEROL
4HIC1Mod. Amino Acid4-METHYL-HISTIDINE
5IPA2Ligand/IonISOPROPYL ALCOHOL
6NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
7ZN4Ligand/IonZINC ION

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIC A:1 , HIS A:91 , TYR A:224BINDING SITE FOR RESIDUE CU A 301
02AC2SOFTWARETYR A:145 , ASN A:158 , TYR A:193 , THR A:205 , ASN A:207 , HOH A:489 , HOH A:493 , HOH A:495 , HOH A:496 , HOH A:567BINDING SITE FOR RESIDUE NAG A 302
03AC3SOFTWAREGLU A:125 , ASP A:129 , HOH A:451 , HOH A:603BINDING SITE FOR RESIDUE ZN A 303
04AC4SOFTWAREHIS A:15 , GLU A:29 , HOH A:404 , HOH A:471BINDING SITE FOR RESIDUE ZN A 304
05AC5SOFTWAREASP A:36 , ASP A:38 , GLU A:203 , HOH A:458BINDING SITE FOR RESIDUE ZN A 305
06AC6SOFTWAREHIS A:87 , GLU A:142 , HOH A:578 , HOH A:579BINDING SITE FOR RESIDUE ZN A 306
07AC7SOFTWAREGLU A:29 , PRO A:30 , HOH A:606 , HOH A:612BINDING SITE FOR RESIDUE IPA A 307
08AC8SOFTWAREGLN A:71 , SER A:72 , TYR A:73 , SER A:74 , GLU A:77 , ACT A:317BINDING SITE FOR RESIDUE GOL A 308
09AC9SOFTWARETRP A:34 , PRO A:35 , TYR A:114 , THR A:117 , ASP A:148 , GLU A:153 , HOH A:468 , HOH A:470BINDING SITE FOR RESIDUE GOL A 309
10BC1SOFTWAREHIC A:1 , CYS A:25 , ARG A:53 , HOH A:604BINDING SITE FOR RESIDUE IPA A 310
11BC2SOFTWAREGLN A:101 , GLN A:103 , GLU A:151 , GLY A:152 , TRP A:156 , TYR A:204 , HOH A:428 , HOH A:526 , HOH A:527BINDING SITE FOR RESIDUE GOL A 311
12BC3SOFTWAREASP A:119 , ASP A:148 , PHE A:166 , GLU A:167 , PHE A:218 , HOH A:469 , HOH A:537BINDING SITE FOR RESIDUE GOL A 312
13BC4SOFTWAREGLY A:144 , TYR A:145 , THR A:162 , CYS A:163 , ASN A:164 , GOL A:314 , GOL A:315 , HOH A:434BINDING SITE FOR RESIDUE ACT A 313
14BC5SOFTWAREASN A:118 , TYR A:145 , SER A:146 , ALA A:147 , ACT A:313 , HOH A:414 , HOH A:574BINDING SITE FOR RESIDUE GOL A 314
15BC6SOFTWAREGLY A:144 , THR A:162 , ASN A:164 , LYS A:197 , ACT A:313 , HOH A:409 , HOH A:416 , HOH A:545BINDING SITE FOR RESIDUE GOL A 315
16BC7SOFTWAREILE A:27 , LEU A:28 , GLU A:29 , SER A:45 , HOH A:596 , HOH A:606BINDING SITE FOR RESIDUE GOL A 316
17BC8SOFTWARESER A:74 , GLU A:77 , ALA A:130 , GOL A:308BINDING SITE FOR RESIDUE ACT A 317

(-) SS Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1A:22 -A:25
2A:48 -A:227
3A:84 -A:185
4A:100 -A:127
5A:135 -A:143
6A:149 -A:155
7A:163 -A:174

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Ile A:6 -Pro A:7
2Glu A:29 -Pro A:30
3Trp A:34 -Pro A:35
4Glu A:167 -Ala A:168

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OPB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OPB)

(-) Exons   (0, 0)

(no "Exon" information available for 4OPB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:233
                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhh....hhhhh.......................ee....ee.............eee....eeeeeeeee......eeeeee...hhhhhhhhh......hhhhhhhhhhhhhhh..hhhhh......................ee.............................eeeeeeeee.....eeeeeeeeeeee.....eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4opb A   1 hGYMYIPSSRTRLGHEAGIDSCPECAILEPVSSWPDLDAAPVGRSGPCGYNARDSIDYNQPTTNWGSDAVQSYSPGEEIEVQWCVDHNGDHGGMFTYRICQDQSIVDKFLDPSYLPTNDEKQAAEDCFDAGLLPCTDVSGQECGYSADCTEGEACWRNDWFTCNGFEASDRPKCQGVDNAELNSCYTSIAGGYTVTKKVKLPEYTSNHTLISFKWNSFQTGQIYLSCADIAIQ 233
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230   
                            |                                                                                                                                                                                                                                        
                            1-HIC
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OPB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OPB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OPB)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Glu A:167 - Ala A:168   [ RasMol ]  
    Glu A:29 - Pro A:30   [ RasMol ]  
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        Q2U8Y3_ASPOR | Q2U8Y3: 5lsv 5t7j 5t7k 5t7n

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