5LR3 - JenaLib

Title :   RNA DUPLEX HAS CENTRAL CONSECUTIVE GA PAIRS FLANKED BY G-U BASEPAIRS

Authors :   L. Huang, D. M. J. Lilley

Date :   18 Aug 16 (Deposition) - 21 Jun 17 (Release) - 28 Jun 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.65

Chains :   Asym./Biol. Unit : A,B

Keywords :   N6-Methyladenine, Rna Folding, Watson-Crick Basepairs, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. Huang, S. Ashraf, J. Wang, D. M. Lilley
Control Of Box C/D Snornp Assembly By N(6)-Methylation Of Adenine.
Embo Rep. 2017
PubMed-ID: 28623187 | Reference-DOI: 10.15252/EMBR.201743967

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 3)

Sites (3, 3)

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	G B:1 , CBV B:2 , HOH B:201 , HOH B:207	binding site for residue SO4 B 101
2	AC2	SOFTWARE	G A:1 , G A:9 , C A:10 , C B:3 , C B:10 , SO4 B:101 , HOH B:201 , HOH B:207 , HOH B:212 , HOH B:214	binding site for Di-nucleotide G B 1 and CBV B 2
3	AC3	SOFTWARE	G A:8 , G A:9 , C A:10 , G B:1 , G B:4 , SO4 B:101 , HOH B:207 , HOH B:209 , HOH B:212 , HOH B:214	binding site for Di-nucleotide CBV B 2 and C B 3

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:RNA  Length:10
                                         
                  5lr3 A  1 GxCGGAUGGC 10
                             |      10
                             |        
                             2-CBV

Chain B from PDB  Type:RNA  Length:10
                                         
                  5lr3 B  1 GxCGGAUGGC 10
                             |      10
                             2-CBV

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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