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Sequence, Chains, Asymmetric and Biological Units

Title RNA DUPLEX HAS CENTRAL CONSECUTIVE GA PAIRS FLANKED BY G-U B
Keywords N6-METHYLADENINE, RNA FOLDING, WATSON-CRICK BASEPAIRS, RNA
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5LR3     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 10 194 22
2  RNA    B 10 194 22
3  Ligand   RNA (5'-R(*GP*(CBV)P*CP*GP*GP*AP*UP*GP*GP*C)-3')  B 1 0 5
4 Water     33 0 33
total       54 388 82

Nucleic acids
Unit 1 G1 CBV2 C3 G4 G5 A6 U7 G8 G9 C10
Unit 2 G1 CBV2 C3 G4 G5 A6 U7 G8 G9 C10

Ligands
Unit 3 SO4101

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany