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(-) Description

Title :  CMLA BETA-HYDROXYLASE E377D MUTANT
 
Authors :  C. J. Knoot, J. D. Lipscomb
Date :  16 Jun 16  (Deposition) - 26 Apr 17  (Release) - 26 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.72
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Oxygen Activation, Diiron Cluster, Antibiotic Biosynthesis, Beta- Hydroxylase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. J. Jasniewski, C. J. Knoot, J. D. Lipscomb, L. Que
A Carboxylate Shift Regulates Dioxygen Activation By The Diiron Nonheme Beta-Hydroxylase Cmla Upon Binding Of A Substrate-Loaded Nonribosomal Peptide Synthetase.
Biochemistry V. 55 5818 2016
PubMed-ID: 27668828  |  Reference-DOI: 10.1021/ACS.BIOCHEM.6B00834

(-) Compounds

Molecule 1 - CMLA PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 DE3
    Expression System Taxid: 469008
    Gene: SVEN_0921
    Mutation: YES
    Organism Scientific: STREPTOMYCES VENEZUELAE (STRAIN ATCC 10712 / CBS 650.69 / DSM 40230 / JCM 4526 / NBRC 13096 / PD 04745)
    Organism Taxid: 953739
    Strain: ATCC 10712 / CBS 650.69 / DSM 40230 / JCM 4526 / NBRC 13096 / PD 04745

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric Unit (3, 3)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2FEO1Ligand/IonMU-OXO-DIIRON
3K1Ligand/IonPOTASSIUM ION
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2FEO2Ligand/IonMU-OXO-DIIRON
3K-1Ligand/IonPOTASSIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:305 , HIS A:307 , ASP A:309 , HIS A:310 , ASP A:377 , ASP A:403 , ACT A:603binding site for residue FEO A 601
2AC2SOFTWARETYR A:148 , SER A:150 , TYR A:153binding site for residue K A 602
3AC3SOFTWAREHIS A:258 , ASP A:309 , ASP A:403 , GLU A:430 , ALA A:482 , FEO A:601binding site for residue ACT A 603

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5KIL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5KIL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5KIL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5KIL)

(-) Exons   (0, 0)

(no "Exon" information available for 5KIL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:510
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee...eeeeeee..ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhh..........eeeee......eeeeehhhhhhh....hhh.eeeeeee.....................eeee....hhhhhhhhhh..hhhhhhhhhhhh..hhhhhhhhhh.eee....eeeeee..eeeeee..eeeee.................hhhhh...eeeee....hhhhhhhhhhhhhh..eeeeeee..........hhhhhhhhh....eeee....eeee..eeeeee...............eeeeee..eeeee.........hhhhhhhhhhh...eeeee......hhhhhhhhhh....hhhhhhhh.....hhhhhhhhhhhhh..eeeee....hhhhhhh..hhhhhhhhhhhhhhh..eeee....eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5kil A   1 RYSLRQDIAVEPVIAGWYGWSYLLPPQTLARFVHNRFNRIVESYLDDPQVHAAAVRQRRMHGGPWIHAHEHRDAIEAWYRETAPRRERLDELFEAVRRLEEDILPRHHGECLDPVYQELPAALAGRVEVFYGRDNRTADYRFVEPLMYASEYYDESWQQVRFRPVTEDAREFALTTPMLEYGPEQLLVNVPLNSPLLDAVFRGGLTGTELDDLAARFGLDGERAARFASYFEPTPEDVLEYVGHACVFARHRGTTFLVDPVLSYSGYPGGAENRFTFADLPERIDHLLITHNHQDHMLFETLLRIRHRVGRVLVPKSTNASLVDPGLGGILRRLGFTDVVEVDDLETLSCGSAEVVALPFLGDHGDLRIRSKTGWLIRFGERSVLFAADSTNISPTMYTKVAEVIGPVDTVFIGMESIGAAASWIYGPLYGEPLDRRTDQSRRLNGSNFPQAREIVDALEPDEVYVYAMGLEPWMGVVMPAIVDSDLLVRHVQDKGGTAERLHLRRTLRL 532
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230    || 254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       502       512       522       532
                                                                                                                                                                                                                                                                    235|                                                                                                                                                                                                                                                493|                              
                                                                                                                                                                                                                                                                     250                                                                                                                                                                                                                                                 502
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5KIL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5KIL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5KIL)

(-) Gene Ontology  (1, 1)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        F2RB80_STRVP | F2RB80: 5kik
UniProtKB/TrEMBL
        F2RB80_STRVP | F2RB80: 4jo0

(-) Related Entries Specified in the PDB File

4jo0 4JO0 IS THE WT ENZYME IN OXIDIZED CLUSTER STATE
5kik WT ENZYME IN THE CHEMICALLY REDUCED STATE