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(-) Description

Title :  CRYSTAL STRUCTURE OF CMLA, A DIIRON BETA-HYDROXYLASE FROM STREPTOMYCES VENEZUELAE
 
Authors :  C. J. Knoot, T. M. Makris, C. M. Wilmot, J. D. Lipscomb
Date :  16 Mar 13  (Deposition) - 11 Sep 13  (Release) - 09 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.17
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Nonheme Oxygenase, Dinuclear Iron Cluster, Antibiotic, Beta- Hydroxylation, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. M. Makris, C. J. Knoot, C. M. Wilmot, J. D. Lipscomb
Structure Of A Dinuclear Iron Cluster-Containing Beta-Hydroxylase Active In Antibiotic Biosynthesis.
Biochemistry V. 52 6662 2013
PubMed-ID: 23980641  |  Reference-DOI: 10.1021/BI400845B

(-) Compounds

Molecule 1 - CMLA
    Chains: A
    EC Number: 1.14.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CMLA, SVEN_0921
    Organism Scientific: STREPTOMYCES VENEZUELAE
    Organism Taxid: 54571

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 8)

Asymmetric Unit (5, 8)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2FE2Ligand/IonFE (III) ION
3GOL2Ligand/IonGLYCEROL
4K2Ligand/IonPOTASSIUM ION
5O1Ligand/IonOXYGEN ATOM
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2FE-1Ligand/IonFE (III) ION
3GOL4Ligand/IonGLYCEROL
4K-1Ligand/IonPOTASSIUM ION
5O-1Ligand/IonOXYGEN ATOM

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:305 , HIS A:307 , GLU A:377 , ASP A:403 , FE A:602 , O A:603BINDING SITE FOR RESIDUE FE A 601
2AC2SOFTWAREASP A:309 , HIS A:310 , ASP A:403 , FE A:601 , O A:603 , ACT A:604BINDING SITE FOR RESIDUE FE A 602
3AC3SOFTWAREHIS A:305 , HIS A:307 , ASP A:309 , HIS A:310 , GLU A:377 , ASP A:403 , FE A:601 , FE A:602 , ACT A:604BINDING SITE FOR RESIDUE O A 603
4AC4SOFTWAREASP A:309 , ASP A:403 , GLU A:430 , ALA A:482 , MET A:493 , FE A:602 , O A:603BINDING SITE FOR RESIDUE ACT A 604
5AC5SOFTWARETYR A:148 , ALA A:149 , SER A:150 , TYR A:153 , HOH A:908BINDING SITE FOR RESIDUE K A 605
6AC6SOFTWARESER A:366 , ARG A:392 , GLY A:394BINDING SITE FOR RESIDUE K A 606
7AC7SOFTWAREASP A:198 , ARG A:320 , VAL A:323 , GLY A:349 , THR A:351 , HOH A:822BINDING SITE FOR RESIDUE GOL A 607
8AC8SOFTWARETYR A:255 , HIS A:258 , VAL A:480 , TYR A:481 , ALA A:482 , MET A:483 , GLY A:484 , LEU A:485 , GLU A:486 , ARG A:523 , LEU A:524BINDING SITE FOR RESIDUE GOL A 608

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JO0)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JO0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JO0)

(-) Exons   (0, 0)

(no "Exon" information available for 4JO0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:522
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eee...eeeeeee..ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhh........eeeee......eeeeehhhhhhhh...hhh.eeeeeee.....................eeee....hhhhhhhhhh..hhhhhhhhhhhh..hhhhhhhhhh.eee.....eeeeee..eeeeee..eeeee.................hhhhh...eeeee.........hhhhhhhhh..eeeeeee..........hhhhhhhhh....eeee....eeee..eeeeeee.............eeeeeee..eeeee.........hhhhhhhhhhh...eeeee......hhhhhhhhhh....hhhhhhhh.....hhhhhhhhhhhhh..eeeee....hhhhhhh........hhhhhhhhhhhhhhhhh..eeee....eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4jo0 A  -2 SHMRYSLRQDIAVEPVIAGWYGWSYLLPPQTLARFVHNRFNRIVESYLDDPQVHAAAVRQRRMHGGPWIHAHEHRDAIEAWYRETAPRRERLDELFEAVRRLEEDILPRHHGECLDPVYQELPAALAGRVEVFYGRDNRTADYRFVEPLMYASEYYDESWQQVRFRPVTEDAREFALTTPMLEYGPEQLLVNVPLNSPLLDAVFRGGLTGTELDDLAARFGLDGERAARFASYFEPTPEEDVLEYVGHACVFARHRGTTFLVDPVLSYSGYPGGAENRFTFADLPERIDHLLITHNHQDHMLFETLLRIRHRVGRVLVPKSTNASLVDPGLGGILRRLGFTDVVEVDDLETLSCGSAEVVALPFLGEHGDLRIRSKTGWLIRFGERSVLFAADSTNISPTMYTKVAEVIGPVDTVFIGMESIGAAASWIYGPLYGEPLDRRTDQSRRLNGSNFPQAREIVDALEPDEVYVYAMGLEPWMGVVMAVDYDESHPAIVDSDLLVRHVQDKGGTAERLHLRRTLRL 532
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530  
                                                                                                                                                                                                                                                                       235|                                                                                                                                                                                                                                                                                           
                                                                                                                                                                                                                                                                        249
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4JO0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JO0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JO0)

(-) Gene Ontology  (1, 1)

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        F2RB80_STRVP | F2RB80: 5kik 5kil

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