5K48 - JenaLib

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Title :   VIM-2 METALLO BETA LACTAMASE IN COMPLEX WITH 3-(MERCAPTOMETHYL)-[1,1'-BIPHENYL]-4-CARBOXYLIC ACID

Authors :   D. Zollman, M. Mcdonough, J. Brem, C. Schofield

Date :   20 May 16 (Deposition) - 07 Jun 17 (Release) - 07 Jun 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.74

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Metallo Beta-Lactamase, Antibiotic Resistance, Carbapenamase. Inhibitor, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. Zollman, M. Mcdonough, J. Brem, C. Fishwick, R. Cain, C. Schofield
Vim-2 Metallo Beta Lactamase In Complex With 3-(Mercaptomethyl)-[1, 1'-Biphenyl]-4-Carboxylic Acid
To Be Published
PubMed: search

Molecule 1 - BETA-LACTAMASE VIM-2
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	OPINF
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	BLAVIM-2, BLA VIM-2, BLA-VIM-2, BLASVIM-2, BLAVIM2, BLM, VIM- 2, VIM-2, PAERUG_P32_LONDON_17_VIM_2_10_11_06255
	Organism Scientific	:	PSEUDOMONAS AERUGINOSA
	Organism Taxid	:	287
	Synonym	:	CLASS B BETA-LACTAMASE,CLASS B CARBAPENEMASE VIM-2,METALLO BETA LACTAMASE VIM-2,METALLO BETA-LACTAMASE,METALLO-BETA-LACTAMASE VIM-2,METALLO-BETA-LACTAMASE VIM-2,METTALO-BETA-LACTAMASE VIM-2,VIM-2 METALLO-BETA-LACTAMASE,VIM-2 PROTEIN

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 13)

No.	Name	Count	Type	Full Name
1	FMT	5	Ligand/Ion	FORMIC ACID
2	S5Z	2	Ligand/Ion	4-PHENYL-2-(SULFANYLMETHYL)BENZOIC ACID
3	ZN	6	Ligand/Ion	ZINC ION

Biological Unit 1 (2, 4)

No.	Name	Count	Type	Full Name
1	FMT	3	Ligand/Ion	FORMIC ACID
2	S5Z	1	Ligand/Ion	4-PHENYL-2-(SULFANYLMETHYL)BENZOIC ACID
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (2, 3)

No.	Name	Count	Type	Full Name
1	FMT	2	Ligand/Ion	FORMIC ACID
2	S5Z	1	Ligand/Ion	4-PHENYL-2-(SULFANYLMETHYL)BENZOIC ACID
3	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (13, 13)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	TYR A:67 , HIS A:116 , ASP A:118 , HIS A:179 , ARG A:205 , ASN A:210 , HIS A:240 , ZN A:305 , ZN A:306 , HOH A:438	binding site for residue S5Z A 301
02	AC2	SOFTWARE	ALA A:132 , THR A:133 , THR A:152 , HIS A:153 , HIS A:251 , ASN A:254 , FMT A:303 , ZN A:307 , HOH A:459	binding site for residue FMT A 302
03	AC3	SOFTWARE	ALA A:132 , HIS A:153 , HIS A:251 , ASN A:254 , FMT A:302 , ZN A:307 , HOH A:410	binding site for residue FMT A 303
04	AC4	SOFTWARE	ARG A:166 , GLY A:168 , VAL A:170 , GLY B:147	binding site for residue FMT A 304
05	AC5	SOFTWARE	HIS A:114 , HIS A:116 , HIS A:179 , S5Z A:301	binding site for residue ZN A 305
06	AC6	SOFTWARE	ASP A:118 , ARG A:119 , CYS A:198 , HIS A:240 , S5Z A:301	binding site for residue ZN A 306
07	AC7	SOFTWARE	HIS A:153 , HIS A:251 , FMT A:302 , FMT A:303	binding site for residue ZN A 307
08	AC8	SOFTWARE	TYR B:67 , HIS B:116 , ASP B:118 , HIS B:179 , ARG B:205 , ASN B:210 , HIS B:240 , ZN B:304 , ZN B:305 , HOH B:436	binding site for residue S5Z B 301
09	AC9	SOFTWARE	ALA B:132 , HIS B:153 , FMT B:303 , ZN B:306 , HOH B:410	binding site for residue FMT B 302
10	AD1	SOFTWARE	ALA B:132 , HIS B:153 , FMT B:302 , ZN B:306 , HOH B:430	binding site for residue FMT B 303
11	AD2	SOFTWARE	HIS B:114 , HIS B:116 , HIS B:179 , S5Z B:301	binding site for residue ZN B 304
12	AD3	SOFTWARE	ASP B:118 , ARG B:119 , CYS B:198 , HIS B:240 , S5Z B:301	binding site for residue ZN B 305
13	AD4	SOFTWARE	HIS B:153 , FMT B:302 , FMT B:303	binding site for residue ZN B 306

(no "SS Bond" information available for 5K48)

(no "Cis Peptide Bond" information available for 5K48)

(no "SAP(SNP)/Variant" information available for 5K48)

(no "PROSITE Motif" information available for 5K48)

(no "Exon" information available for 5K48)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:231
                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh....eeeeeee..eeeeeeeeee..eeeeeeeeeeee..eeeee....hhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhh..eeeehhhhhhhhhhhh.....ee........eeeee..eeeee..........eeee....eeeeehhh.................hhhhhhhhhhhhh....eeee.......hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k48 A  32 EYPTVSEIPVGEVRLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAAGVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSASVLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGHGLPGGLDLLKHTTNVVKAHTNR 262
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261

Chain B from PDB  Type:PROTEIN  Length:232
                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh.....eeeeee..eeeeeeeeee..eeeeeeeeeeee..eeeee....hhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhh..eeeehhhhhhhhhhhh.....ee.........eeee..eeee...........eeee....eeeeehhh.................hhhhhhhhhhhhh....eeee.......hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k48 B  32 EYPTVSEIPVGEVRLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAAGVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSASVLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGHGLPGGLDLLKHTTNVVKAHTNRS 263
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

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