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(-) Description

Title :  VIM-2 METALLO-BETA-LACTAMASE IN COMPLEX WITH 2-(2-CHLORO-6-FLUOROBENZYL)-3-OXOISOINDOLINE-4-CARBOXYLIC ACID (COMPOUND 16)
 
Authors :  G. -B. Li, J. Brem, M. A. Mcdonough, C. J. Schofield
Date :  29 Jun 16  (Deposition) - 15 Feb 17  (Release) - 24 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Metallo-Beta-Lactamase, Inhibitor, Complex, Antibiotic Resistance, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. B. Li, M. I. Abboud, J. Brem, H. Someya, C. T. Lohans, S. Y. Yang, J. Spencer, D. W. Wareham, M. A. Mcdonough, C. J. Schofield
Nmr-Filtered Virtual Screening Leads To Non-Metal Chelating Metallo-Beta-Lactamase Inhibitors.
Chem Sci V. 8 928 2017
PubMed-ID: 28451231  |  Reference-DOI: 10.1039/C6SC04524C

(-) Compounds

Molecule 1 - METALLO-BETA-LACTAMASE VIM-2
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: OPINF VECTOR BASED ON PTRIEX VECTOR
    Expression System Taxid: 469008
    Expression System Variant: PLYSS
    Expression System Vector Type: PLASMID
    Gene: BLAVIM-2, BLA VIM-2, BLA-VIM-2, BLASVIM-2, BLAVIM2, BLM, VIM- 2, VIM-2, PAERUG_P32_LONDON_17_VIM_2_10_11_06255
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287
    Other Details: 2-(2-CHLORO-6-FLUOROBENZYL)-3-OXOISOINDOLINE-4- CARBOXYLIC ACID
    Synonym: BETA-LACTAMASE VIM-2,CLASS B CARBAPENEMASE VIM-2,METALLO BETA LACTAMASE VIM-2,METALLO BETA-LACTAMASE,METALLO-BETA-LACTAMASE, BETA LACTAMASE,METALLO-BETA-LACTAMASE VIM-2,VIM-2 METALLO-BETA- LACTAMASE,VIM-2 PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 6)

Asymmetric/Biological Unit (4, 6)
No.NameCountTypeFull Name
16UW1Ligand/Ion2-[(2-CHLORANYL-6-FLUORANYL-PHENYL)METHYL]-3-OXIDANYLIDENE-1~{H}-ISOINDOLE-4-CARBOXYLIC ACID
2FMT1Ligand/IonFORMIC ACID
3GOL2Ligand/IonGLYCEROL
4ZN2Ligand/IonZINC ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:118 , CYS A:198 , HIS A:240 , ZN A:502 , HOH A:621 , HOH A:730binding site for residue ZN A 501
2AC2SOFTWAREHIS A:114 , HIS A:116 , HIS A:179 , ZN A:501 , HOH A:730binding site for residue ZN A 502
3AC3SOFTWAREPHE A:62 , TYR A:67 , TRP A:87 , HIS A:116 , ASP A:117 , ASP A:118 , HIS A:179 , ARG A:205 , GLY A:209 , ASN A:210 , HIS A:240 , HOH A:621 , HOH A:649 , HOH A:654 , HOH A:721binding site for residue 6UW A 503
4AC4SOFTWARESER A:138 , ARG A:141 , ARG A:225 , GLN A:228 , HOH A:710 , HOH A:795binding site for residue FMT A 504
5AC5SOFTWARETYR A:67 , GLU A:202 , ARG A:205 , HIS A:240 , HOH A:685binding site for residue GOL A 505
6AC6SOFTWAREASP A:51 , GLY A:52 , VAL A:74 , ARG A:75 , SER A:190 , HOH A:613 , HOH A:698 , HOH A:728binding site for residue GOL A 506

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LE1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5LE1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LE1)

(-) Exons   (0, 0)

(no "Exon" information available for 5LE1)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:231
                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh.....eeeeee..eeeeeeeeee..eeeeeeeeeeee..eeeee....hhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhh..eeeehhhhhhhhhhhh.....ee.........eeee..eeee...........eeee....eeeeehhh.................hhhhhhhhhhhhh....eeee.......hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5le1 A  31 GEYPTVSEIPVGEVRLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAAGVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSASVLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGHGLPGGLDLLKHTTNVVKAHTN 261
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LE1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LE1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LE1)

(-) Gene Ontology  (2, 2)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q9K2N0_PSEAI | Q9K2N0: 5k48 5n4s 5n4t 5nhz 5ni0
UniProtKB/TrEMBL
        Q9K2N0_PSEAI | Q9K2N0: 1ko2 1ko3 4bz3 4c1d 4c1e 4nq2 4pvo 4pvt 4ua4 5acu 5acv 5acw 5acx 5fqc 5lca 5lcf 5lch 5lm6

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