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(-) Description

Title :  THE CRYSTAL STRUCTURE OF AZOREDUCTASE FROM YERSINIA PESTIS CO92 IN ITS APO FORM
 
Authors :  K. Tan, M. Gu, K. Kwon, W. F. Anderson, A. Joachimiak, Center For Struc Genomics Of Infectious Diseases (Csgid)
Date :  06 May 16  (Deposition) - 15 Jun 16  (Release) - 15 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.54
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, The Center For Structural Genomics Of Infectious Diseases, Csgid, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Tan, M. Gu, K. Kwon, W. F. Anderson, A. Joachimiak
The Crystal Structure Of Azoreductase From Yersinia Pestis Co92 In Its Apo Form
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - FMN-DEPENDENT NADH-AZOREDUCTASE
    Chains: A, B
    EC Number: 1.7.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: AZOR, YPO2323, Y2010, YP_2110
    Organism Scientific: YERSINIA PESTIS CO92
    Organism Taxid: 214092
    Strain: CO92
    Synonym: AZO-DYE REDUCTASE,FMN-DEPENDENT NADH-AZO COMPOUND OXIDOREDUCTASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:99 , PHE B:163binding site for residue GOL A 301
2AC2SOFTWAREALA A:189 , PHE B:99binding site for residue GOL B 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JRO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5JRO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JRO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JRO)

(-) Exons   (0, 0)

(no "Exon" information available for 5JRO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:184
                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee...hhhhhhhhhhhhhhhhhhhhhh...eeeeee...........hhhhhh......hhhhhhhhhhhhhhhhhhhhh.eeeeee.......hhhhhhhhhhhh.....eee....eee.....eeeeee.......hhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jro A   0 AMSKVLVLKSSILATSSQSNQLADFFVEQWQAAHAGDQITVRDLAAQPIPVLDGELVGALRPGTALTPRQQEALALSDELIAELQANDVIVIAAPMYNFNIPTQLKNYFDMIARAGVTFRYTEKGPEGLVTGKRAIILTSRGTPTDLVVPYLRLFLGFIGITDVEFVFAEGADAKTLLAQVVAA 201
                                     9        19        29        39        49        59 ||     70        80        90       100       110       120       130       140 ||    155       165       175||     197    
                                                                                        61|                                                                            142|                         176|            
                                                                                         63                                                                             148                          189            


Chain B from PDB  Type:PROTEIN  Length:182
                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee...hhhhhhhhhhhhhhhhhhhhhh...eeeeee.........hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh.eeeee........hhhhhhhhhhhh.....eeee..eeee.....eeeeeee......hhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jro B   0 AMSKVLVLKSSILATSSQSNQLADFFVEQWQAAHAGDQITVRDLAAQPIPVLDGELVGALRPSALTPRQQEALALSDELIAELQANDVIVIAAPMYNFNIPTQLKNYFDMIARAGVTFRYTEKGPEGLVTGKRAIILTSRGTPTDLVVPYLRLFLGFIGITDVEFVFAEADAKTLLAQVVAA 201
                                     9        19        29        39        49        59  ||    71        81        91       101       111       121       131       141||     156       166       189       199  
                                                                                         62|                                                                          142|                        175|            
                                                                                          65                                                                           148                         189
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JRO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JRO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JRO)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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  AZOR_YERPE | Q8ZE60
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AZOR_YERPE | Q8ZE60: 4ese

(-) Related Entries Specified in the PDB File

4ese IN COMPLEX WITH FMN RELATED ID: CSGID-IDP04320 RELATED DB: TARGETTRACK