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(-) Description

Title :  THE CRYSTAL STRUCTURE OF AZOREDUCTASE FROM YERSINIA PESTIS CO92 IN COMPLEX WITH FMN.
 
Authors :  K. Tan, M. Gu, K. Kwon, W. F. Anderson, A. Joachimiak, Center For Struc Genomics Of Infectious Diseases (Csgid)
Date :  23 Apr 12  (Deposition) - 23 May 12  (Release) - 23 May 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.45
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Azoreductase, Structural Genomics, The Center For Structural Genomics Of Infectious Diseases, Csgid, Niaid, National Institute Of Allergy And Infectious Diseases, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Tan, M. Gu, K. Kwon, W. F. Anderson, A. Joachimiak
The Crystal Structure Of Acyl Carrier Protein Phosphodiesterase From Yersinia Pestis Co92 In Complex With Fmn.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - FMN-DEPENDENT NADH-AZOREDUCTASE
    Chains: A
    EC Number: 1.7.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21 (DE3) MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: AZOR, Y2010, YPO2323, YP_2110
    Organism Scientific: YERSINIA PESTIS
    Organism Taxid: 214092
    Strain: CO92
    Synonym: AZO-DYE REDUCTASE, FMN-DEPENDENT NADH-AZO COMPOUND OXIDOREDUCTASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 6)

Asymmetric Unit (4, 6)
No.NameCountTypeFull Name
112P1Ligand/IonDODECAETHYLENE GLYCOL
2FMN3Ligand/IonFLAVIN MONONUCLEOTIDE
3GOL1Ligand/IonGLYCEROL
4IMD1Ligand/IonIMIDAZOLE
Biological Unit 1 (4, 12)
No.NameCountTypeFull Name
112P2Ligand/IonDODECAETHYLENE GLYCOL
2FMN6Ligand/IonFLAVIN MONONUCLEOTIDE
3GOL2Ligand/IonGLYCEROL
4IMD2Ligand/IonIMIDAZOLE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:98 , PHE A:163 , PRO A:181 , GLU A:182 , VAL A:183 , LYS A:186 , FMN A:302 , HOH A:401 , HOH A:533 , HOH A:538 , HOH A:543 , HOH A:567 , HOH A:585BINDING SITE FOR RESIDUE FMN A 301
2AC2SOFTWARESER A:10 , LEU A:12 , SER A:16 , GLN A:17 , SER A:18 , PRO A:95 , MET A:96 , TYR A:97 , ASN A:98 , PHE A:99 , SER A:140 , FMN A:301 , HOH A:493 , HOH A:540BINDING SITE FOR RESIDUE FMN A 302
3AC3SOFTWAREARG A:134 , ARG A:141 , VAL A:154 , ARG A:158 , ASP A:168 , GLU A:170 , PHE A:171 , PHE A:173 , GLN A:197BINDING SITE FOR RESIDUE FMN A 303
4AC4SOFTWAREALA A:44 , ARG A:69 , HOH A:416 , HOH A:549BINDING SITE FOR RESIDUE 12P A 304
5AC5SOFTWAREGLU A:182 , VAL A:183 , ALA A:184 , THR A:185 , LYS A:186 , ALA A:187 , GLN A:188BINDING SITE FOR RESIDUE GOL A 305
6AC6SOFTWAREASN A:100 , LEU A:152 , HOH A:589BINDING SITE FOR RESIDUE IMD A 306

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ESE)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

(no "Exon" information available for 4ESE)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:193
                                                                                                                                                                                                                                 
               SCOP domains d4esea_ A: automated matches                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee...hhhhhhhhhhhhhhhhhhhhhh...eeeeee.........hhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh.eeeee........hhhhhhhhhhhh.....eeee..eeee.....eeeeee....hhhhhhhhhhhhh...eeeeee...........hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ese A   0 AMSKVLVLKSSILATSSQSNQLADFFVEQWQAAHAGDQITVRDLAAQPIPVLDGELVGALRPSGTALTPRQQEALALSDELIAELQANDVIVIAAPMYNFNIPTQLKNYFDMIARAGVTFRYTEKGPEGLVTGKRAIILTSRGDLVVPYLRLFLGFIGITDVEFVFAEGIAYGPEVATKAQADAKTLLAQVVA 200
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139  ||   157       167       177       187       197   
                                                                                                                                                                        142|                                                 
                                                                                                                                                                         151
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ESE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ESE)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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        AZOR_YERPE | Q8ZE60: 5jro

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