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(-) Description

Title :  PHOSPHORYLATED ROTAVIRUS NSP1 IN COMPLEX WITH IRF-3
 
Authors :  B. Zhao, P. Li
Date :  18 Apr 16  (Deposition) - 15 Jun 16  (Release) - 29 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.72
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A,B  (2x)
Keywords :  Viral Immuinity, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Zhao, C. Shu, X. Gao, B. Sankaran, F. Du, C. L. Shelton, A. B. Herr, J. Y. Ji, P. Li
Structural Basis For Concerted Recruitment And Activation O Irf-3 By Innate Immune Adaptor Proteins.
Proc. Natl. Acad. Sci. Usa V. 113 E3403 2016
PubMed-ID: 27302953  |  Reference-DOI: 10.1073/PNAS.1603269113

(-) Compounds

Molecule 1 - ROTAVIRUS NSP1 PEPTIDE
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: ROTAVIRUS A
    Organism Taxid: 28875
 
Molecule 2 - INTERFERON REGULATORY FACTOR 3
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 189-427
    Gene: IRF3
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: IRF-3

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1PO43Ligand/IonPHOSPHATE ION
2SEP1Mod. Amino AcidPHOSPHOSERINE
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1PO43Ligand/IonPHOSPHATE ION
2SEP1Mod. Amino AcidPHOSPHOSERINE
Biological Unit 2 (2, 8)
No.NameCountTypeFull Name
1PO46Ligand/IonPHOSPHATE ION
2SEP2Mod. Amino AcidPHOSPHOSERINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:328 , ARG A:338 , PRO A:340 , ARG A:341 , HOH A:640binding site for residue PO4 A 501
2AC2SOFTWAREARG A:211 , ASP A:254 , VAL A:257 , ARG A:338 , SER A:339binding site for residue PO4 A 502
3AC3SOFTWARETHR A:237 , PRO A:239 , ASP A:254 , ARG A:255 , GLY A:256 , VAL A:257 , GLY A:335 , GLY A:337binding site for residue PO4 A 503

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JEO)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Val A:233 -Gly A:234
2Ser A:303 -Gly A:304

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JEO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JEO)

(-) Exons   (0, 0)

(no "Exon" information available for 5JEO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:234
                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhh......eeeeeee..eeeeeeee.....eeee...........eeee.........hhhhhhhhhhhhhh....eeeeee..eeeeee.....eeeeee............ee......eeeeehhhhhhhhhhhhh........eeeeee........hhhhh..eeeeeehhhhhhhhhhhhhh....eeee.........eeeehhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5jeo A 189 ENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDRTLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQPWTKRLVMVKVVPTCLRALVEMARVGGASSLENTVDLHISNSHPLSLTSDQYKAYLQDLVEGMDFQ 422
                                   198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418    


Chain B from PDB  Type:PROTEIN  Length:10
                                          
               SCOP domains ---------- SCOP domains
               CATH domains ---------- CATH domains
               Pfam domains ---------- Pfam domains
         Sec.struct. author .......... Sec.struct. author
                 SAPs(SNPs) ---------- SAPs(SNPs)
                    PROSITE ---------- PROSITE
                 Transcript ---------- Transcript
                 5jeo B 482 EEFELLIsNS 491
                                   491
                                 489-SEP
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JEO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JEO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JEO)

(-) Gene Ontology  (52, 54)

Asymmetric Unit(hide GO term definitions)

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  NSP1_ROTS4 | Q99FX5
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        IRF3_HUMAN | Q14653: 1j2f 1qwt 1t2k 1zoq 2o61 2o6g 2pi0 3a77 3qu6 5jej 5jek 5jel 5jem 5jer
        NSP1_ROTS4 | Q99FX5: 5jer

(-) Related Entries Specified in the PDB File

5jej 5jek 5jel 5jem 5jer