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(-) Description

Title :  CRYSTAL STRUCTURE OF THE MYCOBACTERIUM TUBERCULOSIS TRANSCRIPTIONAL REPRESSOR ETHR2 IN COMPLEX WITH BDM41420
 
Authors :  A. Wohlkonig, H. Remaut, A. Tanina, F. Meyer, N. Willand, A. R. Baulard, R. Wintjens
Date :  23 Feb 16  (Deposition) - 26 Apr 17  (Release) - 26 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Helix-Turn-Helix Dna Binding Protein, Tetr Family, Transcription, Regulatory Repressor, Inhibitor, Transcription Repressor-Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Blondiaux, M. Moune, M. Desroses, R. Frita, M. Flipo, V. Mathys, K. Soetaert, M. Kiass, V. Delorme, K. Djaout, V. Trebosc, C. Kemmer, R. Wintjens, A. Wohlkonig, R. Antoine, L. Huot, D. Hot, M. Coscolla, J. Feldmann, S. Gagneux, C. Locht, P. Brodin, M. Gitzinger, B. Deprez, N. Willand, A. R. Baulard
Reversion Of Antibiotic Resistance In Mycobacterium Tuberculosis By Spiroisoxazoline Smart-420.
Science V. 355 1206 2017
PubMed-ID: 28302858  |  Reference-DOI: 10.1126/SCIENCE.AAG1006
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN
    Atcc: 25618
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET15B
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: RV0078, LH57_00450
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 1773
    Other Details: RESIDUE 1-20 ARE THE PURIFICATION TAG
    Synonym: TETR FAMILY TRANSCRIPTIONAL REGULATOR

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
169Y2Ligand/Ion4,4,4-TRIFLUORO-1-(3-PHENYL-1-OXA-2,8-DIAZASPIRO[4.5]DEC-2-EN-8-YL)BUTAN-1-ONE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:70 , MET A:77 , ILE A:93 , ALA A:96 , TRP A:100 , ILE A:113 , PHE A:126 , ALA A:130 , SER A:134 , THR A:138 , LEU A:167 , ASP A:168binding site for residue 69Y A 301
2AC2SOFTWAREGLU B:70 , MET B:74 , ILE B:93 , ALA B:96 , VAL B:97 , TRP B:100 , ILE B:113 , LEU B:114 , PHE B:126 , ALA B:130 , SER B:134 , THR B:138 , LEU B:141 , LEU B:167 , ASP B:168binding site for residue 69Y B 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5ICJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5ICJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5ICJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5ICJ)

(-) Exons   (0, 0)

(no "Exon" information available for 5ICJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:190
                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5icj A  12 SAATREALITGARKLWGLRGYAEVGTPEIATEAGVTRGAMYHQFADKAALFRDVVEVVEQDVMARMATLVAASGAATPADAIRAAVDAWLEVSGDPEVRQLILLDAPVVLGWAGFRDVAQRYSLGMTEQLITEAIRAGQLARQPVRPLAQVLIGALDEAAMFIATADDPKRARRETRQVLRRLIDGMLNG 201
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201


Chain B from PDB  Type:PROTEIN  Length:186
                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5icj B  12 SAATREALITGARKLWGLRGYAEVGTPEIATEAGVTRGAMYHQFADKAALFRDVVEVVEQDVMARMATLVAATPADAIRAAVDAWLEVSGDPEVRQLILLDAPVVLGWAGFRDVAQRYSLGMTEQLITEAIRAGQLARQPVRPLAQVLIGALDEAAMFIATADDPKRARRETRQVLRRLIDGMLNG 201
                                    21        31        41        51        61        71        81 ||     95       105       115       125       135       145       155       165       175       185       195      
                                                                                                  83|                                                                                                                 
                                                                                                   88
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5ICJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5ICJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5ICJ)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/Swiss-Prot
        O53623_MYCTU | O53623: 5n1c 5n1i 5n7o

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