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(-) Description

Title :  CRYSTAL STRUCTURE OF PEDV NSP9 MUTANT-C59A
 
Authors :  F. Deng, G. Peng
Date :  12 Jan 16  (Deposition) - 25 Jan 17  (Release) - 25 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C  (2x)
Keywords :  Rna Binding Proteins, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Deng, G. Peng
Structure Of Pedv Nsp9 Mutant C59A
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - NON-STRUCTURAL PROTEIN 9
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'
    Expression System Strain: BL21-GOLD(DE3)PLYSS AG
    Expression System Taxid: 866768
    Gene: REP, 1A-1B
    Mutation: YES
    Organism Common: PEDV
    Organism Scientific: PORCINE EPIDEMIC DIARRHEA VIRUS CV777
    Organism Taxid: 229032
    Strain: CV777
    Synonym: NSP9

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): AB 
Biological Unit 2 (2x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5HIY)

(-) Sites  (0, 0)

(no "Site" information available for 5HIY)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HIY)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Pro B:6 -Gly B:7
2Pro B:46 -Asp B:47

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HIY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HIY)

(-) Exons   (0, 0)

(no "Exon" information available for 5HIY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:95
                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee....eeeeeeee........eeeeee......eee....eee....eeeee......eeeeeee....hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 5hiy A   7 GKLKQRSIKAEGDGIVGEGKALYNNEGGRTFMYAFISDKPDLRVVKWEANTIELEPPRKFLVDSPNGAQIKYLYFVRNLNTLRRGAVLGYIGATV 105
                                    16        26        36        46       |60        70        80        90       100     
                                                                          54|                                              
                                                                           59                                              


Chain B from PDB  Type:PROTEIN  Length:96
                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeeee....eeeeeeeee....eeeeeeee......eee....eee....eeeeeee..eeeeeeeee....hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                 5hiy B   6 PGKLKQRSIKAEGDGVGEGKALYNNEGGRTFMYAFISDKPDLRVVKWEFNTIELEPPRKFLVDSPNGAQIKYLYFVRNLNTLRRGAVLGYIGATVR 106
                                    15    ||  26        36        46        60        70        80        90       100      
                                         20|                               55|                                              
                                          22                                60                                              


Chain C from PDB  Type:PROTEIN  Length:93
                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.ee.......eeeeee......eeeeeee......ee....ee....eeeee......eeeeeee....hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                 5hiy C   7 GKLKQRSIKAEGDGIVGEGKALYNNEGGRTFMYAFISDKPDLRVVKWNTIELEPPRKFLVDSPNGAQIKYLYFVRNLNTLRRGAVLGYIGATV 105
                                    16        26        36        46      ||62        72        82        92       102   
                                                                         53|                                             
                                                                          60
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HIY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HIY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HIY)

(-) Gene Ontology  (40, 40)

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  Cis Peptide Bonds
    Pro B:46 - Asp B:47   [ RasMol ]  
    Pro B:6 - Gly B:7   [ RasMol ]  
 
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