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(-) Description

Title :  THE STRUCTURE OF PEDV NSP9
 
Authors :  F. Deng, G. Peng
Date :  12 Jan 16  (Deposition) - 25 Jan 17  (Release) - 25 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Deng, G. Peng
Structure Of Pedv Nsp9
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - NON-STRUCTURAL PROTEIN 9
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'
    Expression System Strain: BL21-GOLD(DE3)PLYSS AG
    Expression System Taxid: 866768
    Gene: REP, 1A-1B
    Organism Common: PEDV
    Organism Scientific: PORCINE EPIDEMIC DIARRHEA VIRUS CV777
    Organism Taxid: 229032
    Strain: CV777
    Synonym: NSP9

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5HIZ)

(-) Sites  (0, 0)

(no "Site" information available for 5HIZ)

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:59 -B:59

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Gly A:20 -Ile A:21
2Glu A:32 -Gly A:33
3Gly A:33 -Gly A:34
4Gly B:33 -Gly B:34

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HIZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HIZ)

(-) Exons   (0, 0)

(no "Exon" information available for 5HIZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:96
                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeee....eeeeeeeeee....eeeeeeee......eeee...eeee....eeeeee....eeeeeeee....hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                 5hiz A   7 GKLKQRSIKAEGDGIVGEGKALYNNEGGRTFMYAFISDKPDLRVVKWGGCNTIELEPPRKFLVDSPNGAQIKYLYFVRNLNTLRRGAVLGYIGATV 105
                                    16        26        36        46      ||59        69        79        89        99      
                                                                         53|                                                
                                                                          57                                                


Chain B from PDB  Type:PROTEIN  Length:96
                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeee....eeeeeeeeee....eeeeeee.......eee.....eee....eeeee......eeeeeee....hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                 5hiz B   7 GKLKQRSIKAEGDGIVGEGKALYNNEGGRTFMYAFISDKPDLRVVKWGGCNTIELEPPRKFLVDSPNGAQIKYLYFVRNLNTLRRGAVLGYIGATV 105
                                    16        26        36        46      ||59        69        79        89        99      
                                                                         53|                                                
                                                                          57
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HIZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HIZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HIZ)

(-) Gene Ontology  (40, 40)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Glu A:32 - Gly A:33   [ RasMol ]  
    Gly A:20 - Ile A:21   [ RasMol ]  
    Gly A:33 - Gly A:34   [ RasMol ]  
    Gly B:33 - Gly B:34   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        R1AB_PEDV7 | P0C6Y4: 5hiy

(-) Related Entries Specified in the PDB File

5hiy