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(-) Description

Title :  CRYSTAL STRUCTURE OF LAVANDULYL DIPHOSPHATE SYNTHASE FROM LAVANDULA X INTERMEDIA IN COMPLEX WITH S-THIOLO-ISOPENTENYLDIPHOSPHATE
 
Authors :  M. X. Liu, W. D. Liu, J. Gao, Y. Y. Zheng, C. C. Chen, R. T. Guo
Date :  04 Jan 16  (Deposition) - 02 Mar 16  (Release) - 13 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Substrate Binding, Transferase, Lavandulyl, Inhibitor, Transferase- Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. X. Liu, C. C. Chen, L. Chen, X. S. Xiao, Y. Y. Zheng, J. W. Huang, W. D. Liu, T. P. Ko, Y. S. Cheng, X. X. Feng, E. Oldfield, R. T. Guo, Y. H. Ma
Structure And Function Of A "Head-To-Middle" Prenyltransferase: Lavandulyl Diphosphate Synthase
Angew. Chem. Int. Ed. Engl. V. 55 4721 2016
PubMed-ID: 26922900  |  Reference-DOI: 10.1002/ANIE.201600656

(-) Compounds

Molecule 1 - PRENYLTRANSFERENCE FOR PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET46EK/LIC
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: LAVANDULA LANATA
    Organism Taxid: 39330

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1DST2Ligand/IonDIMETHYLALLYL S-THIOLODIPHOSPHATE
2MG1Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1DST4Ligand/IonDIMETHYLALLYL S-THIOLODIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:76 , DST A:402 , DST A:403 , HOH A:510binding site for residue MG A 401
2AC2SOFTWAREILE A:75 , ASP A:76 , TRP A:118 , ALA A:119 , LEU A:120 , SER A:121 , ASN A:124 , ARG A:127 , ARG A:248 , ARG A:254 , SER A:256 , MG A:401 , DST A:403 , HOH A:510binding site for residue DST A 402
3AC3SOFTWAREASP A:76 , GLY A:77 , HIS A:78 , ARG A:79 , LYS A:80 , HIS A:93 , ARG A:127 , MG A:401 , DST A:402 , HOH A:501 , HOH A:510binding site for residue DST A 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HC7)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:230
                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee..hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh...eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhhhhhhhh......eeeeee..hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh......eeeee.................eeeee..hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hc7 A  64 DEVTPNHVAIIIDGHRKWAKSRGVTVQEGHQTGVNNWKHIISRASQLGIKLLTIWALSPQNFNRSKMEVDFLMRIYEDFLRSDVKELVTSQQDIQFSAIGDKSRLPEYLQDAISYAEGLSQANKGMHFILAVAYGGREDIVEAARKIAAKVEHGILRPDDIDEATFEQHLMTNITKFPSPDLLIRAAGEQRLSNFFLWQLPFTEFYFTPKLFPDFGEADLLDALASYRCR 293
                                    73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293
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 Classification and Annotation

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 Related Entries

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        A0A140UHQ1_L | A0A140UHQ1: 5hc6 5hc8

(-) Related Entries Specified in the PDB File

5hc6 5hc8