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(-) Description

Title :  CRYSTAL STRUCTURE OF LAVANDULYL DIPHOSPHATE SYNTHASE FROM LAVANDULA X INTERMEDIA IN APO FORM
 
Authors :  M. X. Liu, W. D. Liu, J. Gao, Y. Y. Zheng, C. C. Chen, R. T. Guo
Date :  04 Jan 16  (Deposition) - 02 Mar 16  (Release) - 13 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Substrate Binding, Lavandulyl, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. X. Liu, C. C. Chen, L. Chen, X. S. Xiao, Y. Y. Zheng, J. W. Huang, W. D. Liu, T. P. Ko, Y. S. Cheng, X. X. Feng, E. Oldfield, R. T. Guo, Y. H. Ma
Structure And Function Of A "Head-To-Middle" Prenyltransferase: Lavandulyl Diphosphate Synthase
Angew. Chem. Int. Ed. Engl. V. 55 4721 2016
PubMed-ID: 26922900  |  Reference-DOI: 10.1002/ANIE.201600656

(-) Compounds

Molecule 1 - PRENYLTRANSFERENCE FOR PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET46EK/LIC
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: LAVANDULA LANATA
    Organism Taxid: 39330

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1SO46Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:76 , GLY A:77 , HIS A:78 , ARG A:79 , HIS A:93 , ARG A:127binding site for residue SO4 A 401
2AC2SOFTWAREGLN A:158 , HIS A:190 , THR A:238 , LYS A:239binding site for residue SO4 A 402
3AC3SOFTWAREARG A:248 , ARG A:254 , SER A:256 , HOH A:527binding site for residue SO4 A 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HC6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5HC6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HC6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HC6)

(-) Exons   (0, 0)

(no "Exon" information available for 5HC6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:230
                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee..hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhhhhhhhhh.....eeeeee..hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh......eeee..................eeee...hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hc6 A  64 DEVTPNHVAIIIDGHRKWAKSRGVTVQEGHQTGVNNWKHIISRASQLGIKLLTIWALSPQNFNRSKMEVDFLMRIYEDFLRSDVKELVTSQQDIQFSAIGDKSRLPEYLQDAISYAEGLSQANKGMHFILAVAYGGREDIVEAARKIAAKVEHGILRPDDIDEATFEQHLMTNITKFPSPDLLIRAAGEQRLSNFFLWQLPFTEFYFTPKLFPDFGEADLLDALASYRCR 293
                                    73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HC6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HC6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HC6)

(-) Gene Ontology  (0, 0)

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 Related Entries

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        A0A140UHQ1_L | A0A140UHQ1: 5hc7 5hc8

(-) Related Entries Specified in the PDB File

5hc7 5hc8