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(-) Description

Title :  CLPC N-TERMINAL DOMAIN WITH BOUND PHOSPHO-ARGININE
 
Authors :  M. J. Suskiewicz, T. Clausen
Date :  01 Jan 16  (Deposition) - 12 Oct 16  (Release) - 09 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Clp Protease, Degradation Tag, Protein Phosphorylation, Phospho- Residue Binding Site, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. B. Trentini, M. J. Suskiewicz, A. Heuck, R. Kurzbauer, L. Deszcz, K. Mechtler, T. Clausen
Arginine Phosphorylation Marks Proteins For Degradation By Clp Protease.
Nature V. 539 48 2016
PubMed-ID: 27749819  |  Reference-DOI: 10.1038/NATURE20122

(-) Compounds

Molecule 1 - NEGATIVE REGULATOR OF GENETIC COMPETENCE CLPC/MECB
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: CLPC, MECB, BSU00860
    Organism Scientific: BACILLUS SUBTILIS (STRAIN 168)
    Organism Taxid: 224308

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric/Biological Unit (3, 8)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2RPI2Ligand/IonPHOSPHO-ARGININE
3SO45Ligand/IonSULFATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:77 , HIS A:79 , ARG A:114 , HOH A:318binding site for residue SO4 A 201
2AC2SOFTWAREHIS A:79 , TYR A:80 , LYS A:85 , ARG A:96 , LYS A:97binding site for residue SO4 A 202
3AC3SOFTWARELYS A:59 , LYS A:62 , VAL A:129 , SER A:130 , LEU A:131 , ASN A:132 , HOH A:309binding site for residue SO4 A 203
4AC4SOFTWAREGLN A:11 , HIS A:100 , SER A:101 , TYR A:102 , GLY A:148 , SER A:149 , ACT A:208 , HOH A:307 , HOH A:315binding site for residue SO4 A 204
5AC5SOFTWAREARG A:40 , SER A:57 , GLU A:58 , GLN A:61 , HOH A:329binding site for residue SO4 A 205
6AC6SOFTWAREGLY A:30 , THR A:31 , GLU A:32 , GLN A:51 , GLY A:56 , SER A:57 , GLU A:58 , THR A:81 , ARG A:83 , GLY A:118 , VAL A:119 , ASN A:125 , HOH A:301 , HOH A:304 , HOH A:322 , HOH A:330binding site for residue RPI A 206
7AC7SOFTWARETHR A:7 , GLU A:8 , ARG A:9 , GLY A:44 , ILE A:45 , LYS A:48 , GLY A:104 , THR A:105 , GLU A:106 , THR A:147 , GLY A:148 , SER A:149 , ACT A:208 , HOH A:302 , HOH A:317binding site for residue RPI A 207
8AC8SOFTWAREPHE A:6 , GLU A:8 , SER A:149 , SO4 A:204 , RPI A:207binding site for residue ACT A 208

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HBN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5HBN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HBN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HBN)

(-) Exons   (0, 0)

(no "Exon" information available for 5HBN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:145
                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhh...eehhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhhh.........eehhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hbn A   5 RFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGS 149
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HBN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HBN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HBN)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CLPC_BACSU | P37571: 2k77 2y1q 2y1r 3j3r 3j3s 3j3t 3j3u 3pxg 3pxi

(-) Related Entries Specified in the PDB File

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