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(-) Description

Title :  NMR SOLUTION STRUCTURE OF THE BACILLUS SUBTILIS CLPC N-DOMAIN
 
Authors :  D. J. Kojetin, P. D. Mclaughlin, R. J. Thompson, M. Rance, J. Cavanagh
Date :  04 Aug 08  (Deposition) - 28 Apr 09  (Release) - 28 Apr 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (30x)
Keywords :  Hsp100/Clp/Aaa+, N-Domain, Repeat, N-Clpcr, Chaperone/Protease, Competence, Chaperone, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. J. Kojetin, P. D. Mclaughlin, R. J. Thompson, D. Dubnau, P. Prepiak, M. Rance, J. Cavanagh
Structural And Motional Contributions Of The Bacillus Subtilis Clpc N-Domain To Adaptor Protein Interactions.
J. Mol. Biol. V. 387 639 2009
PubMed-ID: 19361434  |  Reference-DOI: 10.1016/J.JMB.2009.01.046
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - NEGATIVE REGULATOR OF GENETIC COMPETENCE CLPC/MECB
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-16B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: N-TERMINAL DOMAIN (UNP RESIDUES 1-145)
    Gene: CLPC, MECB, BSU00860
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 1423

 Structural Features

(-) Chains, Units

  
NMR Structure (30x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2K77)

(-) Sites  (0, 0)

(no "Site" information available for 2K77)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2K77)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2K77)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2K77)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2K77)

(-) Exons   (0, 0)

(no "Exon" information available for 2K77)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:145
 aligned with CLPC_BACSU | P37571 from UniProtKB/Swiss-Prot  Length:810

    Alignment length:145
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140     
           CLPC_BACSU     1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSN 145
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2k77A00 A:1-145 Double Clp-N motif                                                                                                                CATH domains
           Pfam domains (1) ------------------------------------------------------------------------------------------Clp_N-2k77A01 A:91-143                               -- Pfam domains (1)
           Pfam domains (2) ------------------------------------------------------------------------------------------Clp_N-2k77A02 A:91-143                               -- Pfam domains (2)
         Sec.struct. author ......hhhhhhhhhhhhhhhhhh...eehhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhhh.........eehhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2k77 A   1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSN 145
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2K77)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (1, 2)

NMR Structure
(-)
Clan: no clan defined [family: Clp_N] (16)
(-)
Family: Clp_N (16)

(-) Gene Ontology  (7, 7)

NMR Structure(hide GO term definitions)
Chain A   (CLPC_BACSU | P37571)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0030420    establishment of competence for transformation    The process in which a naturally transformable bacterium acquires the ability to take up exogenous DNA. This term should be applied only to naturally transformable bacteria, and should not be used in the context of artificially induced bacterial transformation.
    GO:0019538    protein metabolic process    The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

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  CLPC_BACSU | P37571
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CLPC_BACSU | P37571: 2y1q 2y1r 3j3r 3j3s 3j3t 3j3u 3pxg 3pxi 5hbn

(-) Related Entries Specified in the PDB File

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