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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CLASS A BETA-LACTAMASE PENL-TTR11 IN COMPLEX WITH CBA
 
Authors :  J. M. Choi, H. Yi, H. S. Kim, S. H. Lee
Date :  10 Jul 16  (Deposition) - 15 Feb 17  (Release) - 15 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Omega-Loop, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Yi, J. M. Choi, J. Hwang, F. Prati, T. P. Cao, S. H. Lee, H. S. Kim
High Adaptability Of The Omega Loop Underlies The Substrate-Spectrum-Extension Evolution Of A Class A Beta-Lactamase, Penl
Sci Rep V. 6 36527 2016
PubMed-ID: 27827433  |  Reference-DOI: 10.1038/SREP36527

(-) Compounds

Molecule 1 - BETA-LACTAMASE
    Chains: A
    EC Number: 3.5.2.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET28A(+)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: BLA, DR63_4327
    Organism Scientific: BURKHOLDERIA THAILANDENSIS
    Organism Taxid: 271848
    Strain: ATCC 700388 / DSM 13276 / CIP 106301 / E264

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1CB41Ligand/IonPINACOL[[2-AMINO-ALPHA-(1-CARBOXY-1-METHYLETHOXYIMINO)-4-THIAZOLEACETYL]AMINO]METHANEBORONATE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:69 , SER A:70 , ARG A:104 , SER A:130 , ASN A:132 , GLY A:256 , THR A:257 , GLY A:258 , ASP A:260 , HOH A:542 , HOH A:562 , HOH A:656binding site for residue CB4 A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5GLD)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5GLD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5GLD)

(-) Exons   (0, 0)

(no "Exon" information available for 5GLD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:261
                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh...eeeeeeeee.....eeee.....ee...hhhhhhhhhhhhhh..hhhhhh.eeeehhhhh.....hhhhh.eeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................eehhhhhhhhhhhhhh....hhhhhhhhhhhhhh......hhhhhh....eeeeeeeee...eeeeeeeee......eeeeeeeee.......hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5gld A  22 GSHMRNVAAEQQLRELESTFDGRLGFVALDTATGARIAHRADERFPFCSTFKTMLSAAVLARSAGDAALLQRRIPYAKRDLVRYSPITEKHVGAGMTVAELCAATLQYSDNTAANLLIALLGGPQAVTAYARSIGDATFRLDRRLPGDERDTTTPAAMAASVRRLLVGDALGTAQRAQLNAWMLGNKTGDARIRAGVPAGWRVADKTGTGDYGTGNDIGVAYPPDRAPIVFVVYTTMRSRNAQARDDVIASAARIAARAFV 311
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161   ||  198       208       218       228       238       248       258|      269  ||   280       290       300       310 
                                                                                                                                                                         165|                                                              258|         272|                                     
                                                                                                                                                                          193                                                               260          274
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5GLD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5GLD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5GLD)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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        Q2T5A3_BURTA | Q2T5A3: 5gl9 5gla 5glb 5glc

(-) Related Entries Specified in the PDB File

5gl9 5gla 5glb 5glc