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(-) Description

Title :  LEISHMANIA MAJOR N-MYRISTOYLTRANSFERASE IN COMPLEX WITH A QUINOLINE INHIBITOR (COMPOUND 19).
 
Authors :  V. Goncalves, J. A. Brannigan, A. Laporte, A. S. Bell, S. M. Roberts, A. J. Wilkinson, R. J. Leatherbarrow, E. W. Tate
Date :  06 Apr 16  (Deposition) - 15 Feb 17  (Release) - 28 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.52
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase, Myristoylation, Malaria, Inhibitor, Drug Design, Quinoline (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Goncalves, J. A. Brannigan, A. Laporte, A. S. Bell, S. M. Roberts, A. J. Wilkinson, R. J. Leatherbarrow, E. W. Tate
Structure-Guided Optimization Of Quinoline Inhibitors Of Plasmodium N-Myristoyltransferase.
Medchemcomm V. 8 191 2017
PubMed-ID: 28626547  |  Reference-DOI: 10.1039/C6MD00531D

(-) Compounds

Molecule 1 - GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE
    Chains: A
    EC Number: 2.3.1.97
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: MAC040-B01
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: ROSETTA2 PLYSS
    Expression System Vector: PET15-DERIVATIVE
    Organism Scientific: LEISHMANIA MAJOR
    Organism Taxid: 5664

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 4)

Asymmetric/Biological Unit (4, 4)
No.NameCountTypeFull Name
1DMS1Ligand/IonDIMETHYL SULFOXIDE
2MG1Ligand/IonMAGNESIUM ION
3MYA1Ligand/IonTETRADECANOYL-COA
4QBY1Ligand/Ion6-(BENZYLOXY)-4-(ETHYLSULFANYL)-3-[(MORPHOLIN-4-YL)

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:175 , GLU A:177 , LYS A:178 , ARG A:179 , LEU A:180 , MYA A:1423BINDING SITE FOR RESIDUE MG A 1422
2AC2SOFTWAREHIS A:12 , ALA A:13 , PHE A:14 , TRP A:15 , ASN A:79 , TYR A:80 , VAL A:81 , PHE A:168 , LEU A:169 , CYS A:170 , VAL A:171 , ARG A:176 , GLU A:177 , LYS A:178 , ARG A:179 , LEU A:180 , ALA A:181 , PRO A:182 , THR A:189 , VAL A:192 , TRP A:198 , TYR A:202 , THR A:203 , LEU A:208 , TYR A:404 , MG A:1422 , HOH A:2002 , HOH A:2003 , HOH A:2218 , HOH A:2223 , HOH A:2376 , HOH A:2377 , HOH A:2378 , HOH A:2379 , HOH A:2380 , HOH A:2381BINDING SITE FOR RESIDUE MYA A 1423
3AC3SOFTWAREVAL A:81 , GLU A:82 , ASP A:83 , PHE A:88 , PHE A:90 , TYR A:217 , HIS A:219 , ARG A:231 , SER A:330 , TYR A:345 , ASN A:376 , HOH A:2323BINDING SITE FOR RESIDUE QBY A 1424
4AC4SOFTWAREPHE A:90 , TYR A:217 , ILE A:328 , TYR A:345 , LEU A:421 , HOH A:2375BINDING SITE FOR RESIDUE DMS A 1425

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5G20)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Pro A:209 -Thr A:210
2Gly A:234 -Ile A:235

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5G20)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5G20)

(-) Exons   (0, 0)

(no "Exon" information available for 5G20)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:411
                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh....hhhhhhhh..........hhhhh..........eeee.....hhhhhhhhhhhhhhhh.......eee..hhhhhhhhhh....hhh.eeeeee.....eeeeeeeeeeeee...hhhhhhhhhhh.hhhhhhh....eeeeeeeeeee.hhhh..hhhhhhhhhhhhhhhh.....eeeee........eeeeeeeee.hhhhhhhhh....hhhhh...hhhhhhhhhh..........eee.hhhhhhhhhhhhhhhhh....ee..hhhhhhhhhh.....eeeeeee....eeeeeeeeeeeeee.......eeeeeeeeeeee...hhhhhhhhhhhhhhhh...eeeee...hhhhhh.....eeeeeeeeeeee.......hhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5g20 A  11 AHAFWSTQPVPQTEDETEKIVFAGPMDEPKTVADIPEEPYPIASTFEWWTPNMEAADDIHAIYELLRDNYVEDDDSMFRFNYSEEFLQWALCPPNYIPDWHVAVRRKADKKLLAFIAGVPVTLRMGTPKYMKVKAQEKGEGEEAAKYDEPRHICEINFLCVHKQLREKRLAPILIKEATRRVNRTNVWQAVYTAGVLLPTPYASGQYFHRSLNPEKLVEIRFSGIPAQYQKFQNPMAMLKRNYQLPSAPKNSGLREMKPSDVPQVRRILMNYLDSFDVGPVFSDAEISHYLLPRDGVVFTYVVENDKKVTDFFSFYRIPSTVIGNSNYNLLNAAYVHYYAATSIPLHQLILDLLIVAHSRGFDVCNMVEILDNRSFVEQLKFGAGDGHLRYYFYNWAYPKIKPSQVALVML 421
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5G20)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5G20)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5G20)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q4Q5S8_LEIMA | Q4Q5S8: 2wsa 3h5z 4a2z 4a30 4a31 4a32 4a33 4c7h 4c7i 4cgl 4cgm 4cgn 4cgo 4cgp 4cyn 4cyo 4cyp 4cyq 4ucm 4ucn 4ucp 5a27 5a28 5ag4 5ag5 5ag6 5ag7 5age 5g21

(-) Related Entries Specified in the PDB File

5g1z PLASMODIUM VIVAX N-MYRISTOYLTRANSFERASE IN COMPLEX WITH A QUINOLINE INHIBITOR (COMPOUND 1)
5g21 LEISHMANIA MAJOR N-MYRISTOYLTRANSFERASE IN COMPLEX WITH A QUINOLINE INHIBITOR (COMPOUND 26).
5g22 PLASMODIUM VIVAX N-MYRISTOYLTRANSFERASE IN COMPLEX WITH A QUINOLINE INHIBITOR (COMPOUND 26)