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(-) Description

Title :  CRYSTAL STRUCTURE OF FRQ BOUND TO A LIGAND
 
Authors :  A. Chaves-Sanjuan, L. Infantes, M. J. Sanchez-Barrena
Date :  17 Mar 16  (Deposition) - 25 Jan 17  (Release) - 01 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.52
Chains :  Asym./Biol. Unit :  A
Keywords :  Signaling Protein, Calcium Sensor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Mansilla, A. Chaves-Sanjuan, N. E. Campillo, O. Semelidou, L. Martinez-Gonzalez, L. Infantes, J. M. Gonzalez-Rubio, C. Gil, S. Conde, E. M. Skoulakis, A. Ferrus, A. Martinez, M. J. Sanchez-Barrena
Interference Of The Complex Between Ncs-1 And Ric8A With Phenothiazines Regulates Synaptic Function And Is An Approach For Fragile X Syndrome.
Proc. Natl. Acad. Sci. V. 114 E999 2017 U. S. A.
PubMed-ID: 28119500  |  Reference-DOI: 10.1073/PNAS.1611089114

(-) Compounds

Molecule 1 - FREQUENIN 2
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETDUET-1
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Mutation: YES
    Organism Common: FRUIT FLY
    Organism Scientific: DROSOPHILA MELANOGASTER
    Organism Taxid: 7227

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 7)

Asymmetric/Biological Unit (4, 7)
No.NameCountTypeFull Name
1CA3Ligand/IonCALCIUM ION
2EDO1Ligand/Ion1,2-ETHANEDIOL
3GOL2Ligand/IonGLYCEROL
4Z801Ligand/Ion3-(2-CHLORO-10H-PHENOTHIAZIN-10-YL)-N,N-DIMETHYLPROPAN-1-AMINE

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:73 , ASN A:75 , ASP A:77 , ALA A:79 , GLU A:84 , HOH A:2090BINDING SITE FOR RESIDUE CA A 1184
2AC2SOFTWAREASP A:156 , ASN A:158 , ASP A:160 , ARG A:162 , GLU A:167 , HOH A:2139BINDING SITE FOR RESIDUE CA A 1185
3AC3SOFTWAREASP A:109 , ASP A:111 , ASP A:113 , TYR A:115 , GLU A:120 , HOH A:2114BINDING SITE FOR RESIDUE CA A 1186
4AC4SOFTWARETYR A:52 , PHE A:72 , PHE A:85 , THR A:92 , GOL A:1188 , EDO A:1190 , HOH A:2045BINDING SITE FOR RESIDUE Z80 A 1187
5AC5SOFTWARETRP A:30 , PHE A:85 , Z80 A:1187 , EDO A:1190BINDING SITE FOR RESIDUE GOL A 1188
6AC6SOFTWARETHR A:18 , ASP A:19 , THR A:20 , HOH A:2160 , HOH A:2161BINDING SITE FOR RESIDUE GOL A 1189
7AC7SOFTWAREASP A:37 , ILE A:51 , Z80 A:1187 , GOL A:1188 , HOH A:2164BINDING SITE FOR RESIDUE EDO A 1190

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5G08)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5G08)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5G08)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5G08)

(-) Exons   (0, 0)

(no "Exon" information available for 5G08)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:180
                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhh..hhhhhhhhhhhhhhhh....eehhhhhhhhhhhh....hhhhhhhhhhhhh.....eehhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eehhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.....eehhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5g08 A   4 KNSKLKQDTIDRLTTDTYFTEKEIRQWHKGFLKDCPNGLLTEQGFIKIYKQFFPDGDPSKFASLVFRVFDENNDGAIEFEEFIRALSITSRGNLDEKLHWAFRLYDVDNDGYITREEMYNIVDAIYQMVGQQPQTEDENTPQKRVDKIFDQMDKNHDDRLTLEEFREGSKADPRMVQALS 183
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5G08)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5G08)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5G08)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 5g08)
 

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 Related Entries

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UniProtKB/TrEMBL
        Q9VWX8_DROME | Q9VWX8: 4by4 4by5 5aan 5fyx

(-) Related Entries Specified in the PDB File

5fyx CRYSTAL STRUCTURE OF FRQ BOUND TO A LIGAND