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(-) Description

Title :  CRYSTAL STRUCTURE OF FRQ BOUND TO A LIGAND
 
Authors :  L. Martinez-Gonzalez, A. Chaves-Sanjuan, L. Infantes, M. J. Sanchez-
Date :  10 Mar 16  (Deposition) - 25 Jan 17  (Release) - 01 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Calcium Sensor, Calcium-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Mansilla, A. Chaves-Sanjuan, N. E. Campillo, O. Semelidou, L. Martinez-Gonzalez, L. Infantes, J. M. Gonzalez-Rubio, C. Gil, S. Conde, E. M. Skoulakis, A. Ferrus, A. Martinez, M. J. Sanchez-Barrena
Interference Of The Complex Between Ncs-1 And Ric8A With Phenothiazines Regulates Synaptic Function And Is An Approach For Fragile X Syndrome.
Proc. Natl. Acad. Sci. V. 114 E999 2017 U. S. A.
PubMed-ID: 28119500  |  Reference-DOI: 10.1073/PNAS.1611089114

(-) Compounds

Molecule 1 - FREQUENIN 2
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PETDUET-1
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Common: FRUIT FLY
    Organism Scientific: DROSOPHILA MELANOGASTER
    Organism Taxid: 7227

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 10)

Asymmetric/Biological Unit (3, 10)
No.NameCountTypeFull Name
1CA3Ligand/IonCALCIUM ION
2FD61Ligand/IonN-[2-(2-CHLORANYLPHENOTHIAZIN-10-YL)ETHYL]-4-METHYL-PIPERAZIN-1-AMINE
3MPD6Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:73 , ASN A:75 , ASP A:77 , ALA A:79 , GLU A:84 , HOH A:2050BINDING SITE FOR RESIDUE CA A 1186
02AC2SOFTWAREASP A:156 , ASN A:158 , ASP A:160 , ARG A:162 , GLU A:167 , HOH A:2073BINDING SITE FOR RESIDUE CA A 1187
03AC3SOFTWAREASP A:109 , ASP A:111 , ASP A:113 , TYR A:115 , GLU A:120 , HOH A:2063BINDING SITE FOR RESIDUE CA A 1188
04AC4SOFTWAREGLY A:33 , ASP A:37 , FD6 A:1195BINDING SITE FOR RESIDUE MPD A 1189
05AC5SOFTWAREGLU A:26 , GLU A:81 , ARG A:94 , HOH A:2020 , HOH A:2021BINDING SITE FOR RESIDUE MPD A 1190
06AC6SOFTWAREASP A:37 , GLY A:47 , LYS A:50 , ILE A:51BINDING SITE FOR RESIDUE MPD A 1191
07AC7SOFTWAREASP A:19 , TYR A:21 , ILE A:91 , GLU A:99 , HOH A:2014 , HOH A:2015BINDING SITE FOR RESIDUE MPD A 1192
08AC8SOFTWAREGLN A:29 , TRP A:30BINDING SITE FOR RESIDUE MPD A 1193
09AC9SOFTWAREGLU A:24 , LYS A:25 , ASP A:77BINDING SITE FOR RESIDUE MPD A 1194
10BC1SOFTWAREILE A:51 , TYR A:52 , PHE A:64 , PHE A:72 , PHE A:85 , THR A:92 , TRP A:103 , LEU A:107 , LEU A:182 , MPD A:1189 , HOH A:2055BINDING SITE FOR RESIDUE FD6 A 1195

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FYX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5FYX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FYX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FYX)

(-) Exons   (0, 0)

(no "Exon" information available for 5FYX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:169
                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh..hhhhhhhhhhhhhhhh...eeehhhhhhhhhh......hhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhh..hhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fyx A   7 KLKQDTIDRLTTDTYFTEKEIRQWHKGFLKDCPNGLLTEQGFIKIYKQFFPDGDPSKFASLVFRVFDENNDGAIEFEEFIRALSITSRGNLDEKLHWAFRLYDVDNDGYITREEMYNIVDAIYQMVTPQKRVDKIFDQMDKNHDDRLTLEEFREGSKADPRMVQALSLG 185
                                    16        26        36        46        56        66        76        86        96       106       116       126     ||146       156       166       176         
                                                                                                                                                       132|                                          
                                                                                                                                                        143
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FYX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FYX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FYX)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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        Q9VWX8_DROME | Q9VWX8: 4by4 4by5 5aan 5g08

(-) Related Entries Specified in the PDB File

5g08 CRYSTAL STRUCTURE OF FRQ BOUND TO A LIGAND