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(-)Asym./Biol. Unit
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Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  CUBIC CRYSTAL OF THE NATIVE PLPD
 
Authors :  P. Vinicius Da Mata Madeira, S. Zouhir, P. Basso, D. Neves, A. Laubie R. Salacha, S. Bleves, E. Faudry, C. Contreras-Martel, A. Dessen
Date :  04 Mar 16  (Deposition) - 06 Apr 16  (Release) - 11 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.14
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Hydrolase, Bacterial Secretion, Phospholipase, Lipid Affinity, Infection (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. V. Da Mata Madeira, S. Zouhir, P. Basso, D. Neves, A. Laubier, R. Salacha, S. Bleves, E. Faudry, C. Contreras-Martel, A. Dessen
Structural Basis Of Lipid Targeting And Destruction By The Type V Secretion System Of Pseudomonas Aeruginosa.
J. Mol. Biol. V. 428 1790 2016
PubMed-ID: 27012424  |  Reference-DOI: 10.1016/J.JMB.2016.03.012

(-) Compounds

Molecule 1 - PATATIN-LIKE PROTEIN, PLPD
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: C43
    Expression System Vector: PET15B
    Expression System Vector Type: PLASMID
    Fragment: PASSENGER DOMAIN, PATATIN-LIKE PROTEIN PLPD, RESIDUES 20-33
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 208964
    Strain: PA01

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5FYA)

(-) Sites  (0, 0)

(no "Site" information available for 5FYA)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FYA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5FYA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FYA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FYA)

(-) Exons   (0, 0)

(no "Exon" information available for 5FYA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:253
                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhhhhh.....eeeeehhhhhhhhhhhhh.hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh....hhhh...eeeeeee.....eeee...hhhhhhhhhh........eee..eeeeehhhhhh.hhhhhhhh...eeeee.............hhhhhhhhhhhhhhhhhhhhhhh......eee..........hhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fya A  23 PKIGLVLSGGAARGLAHIGVLKALDEQGIQIDAIAGTSMGAVVGGLYASGYTPAELERIALEMDWQQALPLGVIQGQNLAMVLESLLVHTSDNRDFDKLAIPFRAVSTDIATGEKVVFRKGHLPQAIRASMSIPAVFAPVEIDGRLLVDGGMVDNIPVDVARDMGVDVVIVVDIGNPLRDRKDLSTVLDVMNQSITLMTRKNSEAQLATLKPGDVLIQPPLSGYGTTDFGRVPQLIDAGYRATTVLAARLAEL 311
                                    32        42        52        62        72        82       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308   
                                                                                              90|                                                                                                                                                                                        
                                                                                              127                                                                                                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:255
                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...hhhhhhhhhhhhhhhhh.....eeeeehhhhhhhhhhhh..hhhhhhhhhhhh........hhhhhhhhhhhhhhhh......ee.hhh...eeeeeee.....eeee.eehhhhhhhhhh........eee..eeeeehhhhhh.hhhhhhhh...eeeee.......hhhhh.hhhhhhhhhhhhhhhhhhhhhhh......eee..........hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fya B  22 RPKIGLVLSGGAARGLAHIGVLKALDEQGIQIDAIAGTSMGAVVGGLYASGYTPAELERIALEMDWQQDGTLGVIQGQNLAMVLESLLVHTSDNRDFDKLAIPFRAVSTDIATGEKVVFRKGHLPQAIRASMSIPAVFAPVEIDGRLLVDGGMVDNIPVDVARDMGVDVVIVVDIGNPLRDRKDLSTVLDVMNQSITLMTRKNSEAQLATLKPGDVLIQPPLSGYGTTDFGRVPQLIDAGYRATTVLAARLAELR 312
                                    31        41        51        61        71        81       123 ||    137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307     
                                                                                              89|  ||                                                                                                                                                                                      
                                                                                              122  ||                                                                                                                                                                                      
                                                                                                 125|                                                                                                                                                                                      
                                                                                                  130
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FYA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FYA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FYA)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9HYQ6_PSEAE | Q9HYQ6: 5fqu

(-) Related Entries Specified in the PDB File

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