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(-) Description

Title :  ORTHORHOMBIC CRYSTAL STRUCTURE OF OF PLPD (SELENOMETHIONINE DERIVATIVE)
 
Authors :  P. Vinicius Da Mata Madeira, S. Zouhir, P. Basso, D. Neves, A. Laubie R. Salacha, S. Bleves, E. Faudry, C. Contreras-Martel, A. Dessen
Date :  14 Dec 15  (Deposition) - 06 Apr 16  (Release) - 11 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.74
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Transport Protein, Bacterial Secretion, Phospholipase, Lipid Affinity, Infection (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. V. Da Mata Madeira, S. Zouhir, P. Basso, D. Neves, A. Laubier, R. Salacha, S. Bleves, E. Faudry, C. Contreras-Martel, A. Dessen
Structural Basis Of Lipid Targeting And Destruction By The Type V Secretion System Of Pseudomonas Aeruginosa.
J. Mol. Biol. V. 428 1790 2016
PubMed-ID: 27012424  |  Reference-DOI: 10.1016/J.JMB.2016.03.012

(-) Compounds

Molecule 1 - PATATIN-LIKE PROTEIN, PLPD
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: C41
    Expression System Vector Type: PLASMID
    Fragment: PASSENGER DOMAIN, UNP RESIDUES 20-333
    Organism Scientific: PSEUDOMONAS AERUGINOSA PAO1
    Organism Taxid: 208964

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 19)

Asymmetric/Biological Unit (3, 19)
No.NameCountTypeFull Name
1AZI1Ligand/IonAZIDE ION
2MSE16Mod. Amino AcidSELENOMETHIONINE
3NA2Ligand/IonSODIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:199 , ILE A:200 , ILE B:200 , NA B:1313 , NA B:1314BINDING SITE FOR RESIDUE AZI B1312
2AC2SOFTWAREARG B:239 , AZI B:1312BINDING SITE FOR RESIDUE NA B1313
3AC3SOFTWAREARG B:203 , AZI B:1312BINDING SITE FOR RESIDUE NA B1314

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FQU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5FQU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FQU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FQU)

(-) Exons   (0, 0)

(no "Exon" information available for 5FQU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:249
                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...hhhhhhhhhhhhhhhhh.....eeeeehhhhhhhhhhhhh.hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh....hhhh...eeeeeee.....eeee...hhhhhhhhhh........ee..eeeehhhhhh.hhhhhhh....eeeee.......hhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.....eee.............hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fqu A  22 RPKIGLVLSGGAARGLAHIGVLKALDEQGIQIDAIAGTSmGAVVGGLYASGYTPAELERIALEmDWQPLGVIQGQNLAmVLESLLVHTSDNRDFDKLAIPFRAVSTDIATGEKVVFRKGHLPQAIRASmSIPAVFAPVEIRLLVDGGmVDNIPVDVARDmGVDVVIVVDIGNPLRDRKDLSTVLDVmNQSITLmTRKNSEAQLATLKPGDVLIQPPLSGYGTTDFGRVPQLIDAGYRATTVLAARLAEL 311
                                    31        41        51        61        71        81   |  |130       140       150       160       170       180       190       200|      212       222       232       242      |252   |   262       272       282       292       302         
                                                                  61-MSE                  85-MSE        139-MSE                                           189-MSE    200|      |         222-MSE                    249-MSE  |                                                       
                                                                                             128                                                                      203      |                                           256-MSE                                                   
                                                                                                                                                                             210-MSE                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:248
                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...hhhhhhhhhhhhhhhhh.....eeeeehhhhhhhhhhhhh.hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh....hhhh...eeeeeee.....eeee...hhhhhhhhhh........ee..eeeehhhhhh.hhhhhhh....eeeee.......hhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.....eee.............hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fqu B  22 RPKIGLVLSGGAARGLAHIGVLKALDEQGIQIDAIAGTSmGAVVGGLYASGYTPAELERIALEmDWQLGVIQGQNLAmVLESLLVHTSDNRDFDKLAIPFRAVSTDIATGEKVVFRKGHLPQAIRASmSIPAVFAPVEIRLLVDGGmVDNIPVDVARDmGVDVVIVVDIGNPLRDRKDLSTVLDVmNQSITLmTRKNSEAQLATLKPGDVLIQPPLSGYGTTDFGRVPQLIDAGYRATTVLAARLAEL 311
                                    31        41        51        61        71        81   |  |131       141       151       161       171       181       191       203      |213       223       233       243     | 253  |    263       273       283       293       303        
                                                                  61-MSE                  85-MSE       139-MSE                                           189-MSE    200|      |         222-MSE                    249-MSE  |                                                       
                                                                                             129                                                                     203      |                                           256-MSE                                                   
                                                                                                                                                                            210-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FQU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FQU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FQU)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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        Q9HYQ6_PSEAE | Q9HYQ6: 5fya

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