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(-) Description

Title :  ALK5 IN COMPLEX WITHA AN N-(4-ANILINO-2-PYRIDYL)ACETAMIDE INHIBITOR.
 
Authors :  F. W. Goldberg, P. Daunt, S. E. Pearson, R. Greenwood, J. Debreczeni, M.
Date :  17 Dec 15  (Deposition) - 27 Jul 16  (Release) - 27 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. W. Goldberg, P. Daunt, S. E. Pearson, R. Greenwood, J. Debreczeni, M. Grist
Identification And Rapid Optimisation Of A Series Of N-(4-Anilino-2-Pyridyl)Acetamide Activin Receptor-Like Kinase 1 (Alk1) Inhibitors
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TGF-BETA RECEPTOR TYPE-1
    Chains: A
    EC Number: 2.7.11.30
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 200-498
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TGFR-1, ALK5, ACTIVIN A RECEPTOR TYPE II-LIKE PROTEIN KINASE OF 53KD, ACTIVIN RECEPTOR-LIKE KINASE 5, ALK-5, ALK5, SERINE/THREONINE-PROTEIN KINASE RECEPTOR R4, SKR4, TGF-BETA TYPE I RECEPTOR, TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I, TGF-BETA RECEPTOR TYPE I, TBETAR-I

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2ZUQ1Ligand/IonN-[4-[(6-CHLORO-[1,3]DIOXOLO[4,5-B]PYRIDIN-7-YL)AMINO]-2-PYRIDYL]CYCLOPROPANECARBOXAMIDE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:269 , GLY A:271 , THR A:272 , TRP A:273 , HOH A:2074BINDING SITE FOR RESIDUE EDO A1499
2AC2SOFTWAREHIS A:256 , GLU A:257 , THR A:272 , GLU A:447 , HOH A:2055BINDING SITE FOR RESIDUE EDO A1500
3AC3SOFTWAREILE A:211 , VAL A:219 , ALA A:230 , LYS A:232 , SER A:280 , ASP A:281 , TYR A:282 , HIS A:283 , GLU A:284 , GLY A:286 , THR A:323 , LEU A:340 , ASP A:351 , HOH A:2042 , HOH A:2094 , HOH A:2241BINDING SITE FOR RESIDUE ZUQ A1501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FRI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5FRI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FRI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FRI)

(-) Exons   (0, 0)

(no "Exon" information available for 5FRI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:301
                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh.eeeeeeeee....eeeeeee..eeeeeeeee..hhhhhhhhhhhhh...........eeeeeeee....eeeeeeee.....hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh..........ee....hhh.eee.....eee......eeee....ee.........hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh......................hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fri A 198 GGTIARTIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 498
                                   207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FRI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FRI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FRI)

(-) Gene Ontology  (99, 99)

Asymmetric/Biological Unit(hide GO term definitions)

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  5fri
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  TGFR1_HUMAN | P36897
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  2.7.11.30
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TGFR1_HUMAN | P36897: 1b6c 1ias 1py5 1rw8 1tbi 1vjy 2l5s 2pjy 2wot 2wou 2x7o 3faa 3gxl 3hmm 3kcf 3kfd 3tzm 4x0m 4x2f 4x2g 4x2j 4x2k 4x2n 5e8s 5e8t 5e8u 5e8w 5e8x 5e8z 5e90 5usq

(-) Related Entries Specified in the PDB File

5fqp SELECTIVE ESTROGEN RECEPTOR DOWNREGULATOR ANTAGONISTS: TETRAHYDROISOQUINOLINE PHENOLS 1.
5fqr SELECTIVE ESTROGEN RECEPTOR DOWNREGULATOR ANTAGONISTS: TETRAHYDROISOQUINOLINE PHENOLS 2.
5fqs SELECTIVE ESTROGEN RECEPTOR DOWNREGULATOR ANTAGONISTS: TETRAHYDROISOQUINOLINE PHENOLS 3.
5fqt SELECTIVE ESTROGEN RECEPTOR DOWNREGULATOR ANTAGONISTS: TETRAHYDROISOQUINOLINE PHENOLS 4.
5fqv SELECTIVE ESTROGEN RECEPTOR DOWNREGULATOR ANTAGONISTS: TETRAHYDROISOQUINOLINE PHENOLS 5.