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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN SUMO E1 UFD DOMAIN IN COMPLEX WITH UBC9 IN A P422 SPACE GROUP.
 
Authors :  B. Liu, L. Castano, M. Lois, D. Reverter
Date :  04 Dec 15  (Deposition) - 16 Nov 16  (Release) - 16 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Ligase, Activating Enzyme, Conjugating Enzyme, Sumo (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Liu, L. Castano, M. Lois, D. Reverter
Crystal Structure Of Human Sumo E1 Ufd Domain In Complex With Ubc9.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SUMO-CONJUGATING ENZYME UBC9
    Chains: A
    EC Number: 6.3.2.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector: PET28
    Expression System Vector Type: PLASMID
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: LYSINE METHYLATION AT LYS110
    Synonym: SUMO-PROTEIN LIGASE, UBIQUITIN CARRIER PROTEIN 9, UBIQUITIN CARRIER PROTEIN I, UBIQUITIN-CONJUGATING ENZYME E2 I, UBIQUITIN- PROTEIN LIGASE I, P18, SUMO E2-CONJUGATING ENZYME
 
Molecule 2 - SUMO-ACTIVATING ENZYME SUBUNIT 2
    Chains: B
    EC Number: 6.3.2.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector: PET28
    Expression System Vector Type: PLASMID
    Fragment: UBIQUITIN FOLD DOMAIN, UNP RESIDUES 446-547
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: LYSINE METHYLATION AT LYS505
    Synonym: ANTHRACYCLINE-ASSOCIATED RESISTANCE ARX, UBIQUITIN-LIKE 1-ACTIVATING ENZYME E1B, UBIQUITIN-LIKE MODIFIER-ACTIVATING ENZYME 2, SUMO E1 ACTIVATING ENZYME

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1LDH1Mod. Amino AcidN~6~-ETHYL-L-LYSINE
2MLZ1Mod. Amino AcidN-METHYL-LYSINE

(-) Sites  (0, 0)

(no "Site" information available for 5FQ2)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FQ2)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Tyr A:68 -Pro A:69
2Glu A:78 -Pro A:79
3Glu B:495 -Gly B:496

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FQ2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FQ2)

(-) Exons   (0, 0)

(no "Exon" information available for 5FQ2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:157
                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh.....eeeeee.....eeeeeeeeeee..........eeeeeee..........eeee................hhhhh.........hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fq2 A   2 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIkQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS 158
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       
                                                                                                                                      110-LDH                                            


Chain B from PDB  Type:PROTEIN  Length:101
                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhhh....eeeee.....eeee......hhhhh...hhhhh.....eeeeee.....eeeeeeee.........eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
                 5fq2 B 447 KPEVTVRLNVHKVTVLTLQDKIVKEKFAMVAPDVQIEDGKGTILISSEEGETEANNHKkLSEFGIRNGSRLQADDFLQDYTLLINILHSEDLGKDVEFEVV 547
                                   456       466       476       486       496       506       516       526       536       546 
                                                                                    505-MLZ
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FQ2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FQ2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FQ2)

(-) Gene Ontology  (41, 51)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Glu A:78 - Pro A:79   [ RasMol ]  
    Glu B:495 - Gly B:496   [ RasMol ]  
    Tyr A:68 - Pro A:69   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SAE2_HUMAN | Q9UBT2: 1y8q 1y8r 2px9 3kyc 3kyd 4w5v
        UBC9_HUMAN | P63279: 1a3s 1kps 1z5q 1z5s 2grn 2gro 2grp 2grq 2grr 2o25 2pe6 2px9 2xwu 3a4s 3uin 3uio 3uip 4w5v 4y1l 5d2m 5f6d 5f6e 5f6u 5f6v 5f6w 5f6x 5f6y

(-) Related Entries Specified in the PDB File

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