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(-) Description

Title :  CRYSTAL STRUCTURE OF THE MID, CAP-BINDING, MID-LINK AND 627 DOMAINS FROM AVIAN INFLUENZA A VIRUS POLYMERASE PB2 SUBUNIT BOUND TO M7GTP H32 CRYSTAL FORM
 
Authors :  E. Thierry, A. Pflug, D. Hart, S. Cusack
Date :  07 Nov 15  (Deposition) - 13 Jan 16  (Release) - 20 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Viral Protein, Influenza A Pb2-C Region Containing Mid, Cap-Binding, Mid- Link, 627 And Nls Domains (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Thierry, D. Guilligay, J. Kosinski, T. Bock, S. Gaudon, A. Round, A. Pflug, N. Hengrung, K. El Omari, F. Baudin, D. J. Hart, M. Beck, S. Cusack
Influenza Polymerase Can Adopt An Alternative Configuration Involving A Radical Repacking Of Pb2 Domains.
Mol. Cell V. 61 125 2016
PubMed-ID: 26711008  |  Reference-DOI: 10.1016/J.MOLCEL.2015.11.016

(-) Compounds

Molecule 1 - INFLUENZA A PB2 SUBUNIT
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Variant: RIL
    Expression System Vector: PET9
    Expression System Vector Type: PLASMID
    Fragment: PB2-C, RESIDUES 247-736
    Organism Scientific: INFLUENZA A VIRUS
    Organism Taxid: 11320
    Strain: A/VIETNAM/1203/2004(H5N1)

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1MGT1Ligand/Ion7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:323 , LYS A:339 , ARG A:355 , HIS A:357 , GLU A:361 , PHE A:363 , LYS A:376 , PHE A:404 , GLN A:406 , ASN A:429 , MET A:431 , ASN A:510 , VAL A:511BINDING SITE FOR RESIDUE MGT A1676

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FMQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5FMQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FMQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FMQ)

(-) Exons   (0, 0)

(no "Exon" information available for 5FMQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
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Chain A from PDB  Type:PROTEIN  Length:424
                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhee..eehhhhhhhh...hhhhhhhhhhh...ee..eee..eeeeeeee..eeeeeeee.....eeeeeeee..eeeeee...eeeeeeee..eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhheee......eeee.....ee..eee..eeee...........ee..ee.....ee.....eee...............ee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh..........eeeee....eeeee.......eeee....eeee..eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fmq A 252 NDDVDQSLIIAARNIVRRATVSADPLASLLEMCHSTQIGGIRMVDILRQNPTEEQAVDICKAAMGLRISSSFSFGGFTFKRTSGSSVKKEEEVLTGNLQTLKIRVHEGYEEFTMVGRRATAILRKATRRLIQLIVSGRDQQSIAEAIIVAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGIEPIDNVMGMIGILPDMTPSTEMSLRGVRVSKMGVDEYSSTERVVVSIDRFLRVRDQRGNVLLSPEEVSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWETVKIQWSQDPTMLYNKMEFEPFQSLVPKAARGQYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAAPPKQSRMQFSSLTVNVRGSGMRILVRGNSPVFNYNKATKRLTVLGKDAGAL 675
                                   261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FMQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FMQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FMQ)

(-) Gene Ontology  (15, 15)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q6DNN3_9INFA | Q6DNN3: 3kc6 3l56 5fmm

(-) Related Entries Specified in the PDB File

5fml INFLUENZA POLYMERASE CAN ADOPT AN ALTERNATIVE CONFIGURATION INVOLVING A RADICAL REPACKING OF PB2 DOMAINS
5fmm INFLUENZA POLYMERASE CAN ADOPT AN ALTERNATIVE CONFIGURATION INVOLVING A RADICAL REPACKING OF PB2 DOMAINS