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(-) Description

Title :  CRYSTAL STRUCTURE OF THE MID, CAP-BINDING, MID-LINK AND 627 DOMAINS FROM AVIAN INFLUENZA A VIRUS POLYMERASE PB2 SUBUNIT BOUND TO M7GTP
 
Authors :  E. Thierry, A. Pflug, D. Hart, S. Cusack
Date :  06 Nov 15  (Deposition) - 13 Jan 16  (Release) - 20 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Viral Protein, Influenza A Pb2-C Region Containing Mid, Cap-Binding, Mid-Link, 627 And Nls Domains (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Thierry, D. Guilligay, J. Kosinski, T. Bock, S. Gaudon, A. Round, A. Pflug, N. Hengrung, K. El Omari, F. Baudin, D. J. Hart, M. Beck, S. Cusack
Influenza Polymerase Can Adopt An Alternative Configuration Involving A Radical Repacking Of Pb2 Domains.
Mol. Cell V. 61 125 2016
PubMed-ID: 26711008  |  Reference-DOI: 10.1016/J.MOLCEL.2015.11.016

(-) Compounds

Molecule 1 - INFLUENZA A PB2 SUBUNIT
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Variant: RIL
    Expression System Vector: PET9
    Expression System Vector Type: PLASMID
    Fragment: PB2-C, RESIDUES 247-736
    Organism Scientific: INFLUENZA A VIRUS
    Organism Taxid: 11320
    Strain: A/VIETNAM/1203/2004(H5N1)

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1FLC1Ligand/IonCITRATE ANION
2MGT1Ligand/Ion7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:323 , LYS A:339 , ARG A:355 , HIS A:357 , GLU A:361 , PHE A:363 , LYS A:376 , PHE A:404 , GLN A:406 , ASN A:429 , MET A:431 , HIS A:432 , VAL A:511 , HOH A:2086 , HOH A:2087 , HOH A:2088 , HOH A:2110 , HOH A:2121 , HOH A:2122 , HOH A:2123 , HOH A:2124 , HOH A:2125BINDING SITE FOR RESIDUE MGT A1676
2AC2SOFTWAREHIS A:285 , ARG A:293 , VAL A:295 , ARG A:299 , ARG A:415BINDING SITE FOR RESIDUE FLC A1677

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FMM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5FMM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FMM)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
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Chain A from PDB  Type:PROTEIN  Length:425
                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhheee..eehhhhhhhh...hhhhhhhhhhh...ee..eee..eeeeeeee..eeeeeeee.....eeeeeeee..eeeeee...eeeeeeee..eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhheee......eeee.....ee..eee..eeee...........ee..ee.....ee.....eeehhhhh..........eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh..........eeeee....eeeee........eee....eeee..eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fmm A 251 RNDDVDQSLIIAARNIVRRATVSADPLASLLEMCHSTQIGGIRMVDILRQNPTEEQAVDICKAAMGLRISSSFSFGGFTFKRTSGSSVKKEEEVLTGNLQTLKIRVHEGYEEFTMVGRRATAILRKATRRLIQLIVSGRDQQSIAEAIIVAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGIEPIDNVMGMIGILPDMTPSTEMSLRGVRVSKMGVDEYSSTERVVVSIDRFLRVRDQRGNVLLSPEEVSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWETVKIQWSQDPTMLYNKMEFEPFQSLVPKAARGQYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAAPPKQSRMQFSSLTVNVRGSGMRILVRGNSPVFNYNKATKRLTVLGKDAGAL 675
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FMM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FMM)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (15, 15)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q6DNN3_9INFA | Q6DNN3: 3kc6 3l56 5fmq

(-) Related Entries Specified in the PDB File

5fml INFLUENZA POLYMERASE CAN ADOPT AN ALTERNATIVE CONFIGURATION INVOLVING A RADICAL REPACKING OF PB2 DOMAINS
5fmq INFLUENZA POLYMERASE CAN ADOPT AN ALTERNATIVE CONFIGURATION INVOLVING A RADICAL REPACKING OF PB2 DOMAINS
5fmz CRYSTAL STRUCTURE OF INFLUENZA B POLYMERASE WITH BOUND 5' VRNA