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(-) Description

Title :  YEAST DELTA-COP-I MU-HOMOLOGY DOMAIN COMPLEXED WITH DSL1 WXWX(MSE) PEPTIDE
 
Authors :  R. J. Suckling, P. R. Evans, D. J. Owen
Date :  13 Oct 15  (Deposition) - 11 Nov 15  (Release) - 06 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,L,M,N,O,P,Q,R,S
Biol. Unit 1:  A,L  (1x)
Biol. Unit 2:  F,Q  (1x)
Biol. Unit 3:  H,S  (1x)
Biol. Unit 4:  E,P  (1x)
Biol. Unit 5:  D,O  (1x)
Biol. Unit 6:  G,R  (1x)
Biol. Unit 7:  B,M  (1x)
Biol. Unit 8:  C,N  (1x)
Keywords :  Protein Transport, Cop-I, Vesicle Coat Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. J. Suckling, P. P. Poon, S. M. Travis, I. V. Majoul, F. M. Hughson, P. R. Evans, R. Duden, D. J. Owen
Structural Basis For The Binding Of Tryptophan-Based Motifs By Delta-Cop.
Proc. Natl. Acad. Sci. Usa V. 112 14242 2015
PubMed-ID: 26578768  |  Reference-DOI: 10.1073/PNAS.1506186112

(-) Compounds

Molecule 1 - COATOMER SUBUNIT DELTA
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: MU-HOMOLOGY DOMAIN, RESIDUES 288-516
    Gene: RET2, YFR051C
    Mutation: YES
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synonym: DELTA-COAT PROTEIN, DELTA-COP
 
Molecule 2 - PROTEIN TRANSPORT PROTEIN DSL1
    Chains: L, M, N, O, P, Q, R, S
    Fragment: WXW MOTIF, RESIDUES 411-419
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Other Details: MSE IN PLACE OF MET
    Synonym: DEPENDENT ON SLY1-20 PROTEIN 1
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678910111213141516
Asymmetric Unit : ABCDEFGHLMNOPQRS
Biological Unit 1 (1x): A       L       
Biological Unit 2 (1x):      F       Q  
Biological Unit 3 (1x):        H       S
Biological Unit 4 (1x):     E       P   
Biological Unit 5 (1x):    D       O    
Biological Unit 6 (1x):       G       R 
Biological Unit 7 (1x):  B       M      
Biological Unit 8 (1x):   C       N     

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 48)

Asymmetric Unit (1, 48)
No.NameCountTypeFull Name
1MSE48Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 5 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 6 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 7 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 8 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 5FJW)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FJW)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Tyr A:494 -Pro A:495
2Tyr B:494 -Pro B:495
3Tyr C:494 -Pro C:495
4Tyr D:494 -Pro D:495
5Tyr E:494 -Pro E:495
6Tyr F:494 -Pro F:495
7Tyr G:494 -Pro G:495
8Tyr H:494 -Pro H:495

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FJW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FJW)

(-) Exons   (0, 0)

(no "Exon" information available for 5FJW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeeeeeeee.....eeeeeeeeeeeeee.hhhhh.eeeee.......hhhhh.ee....hhhhhhhhhee...............eeeeeeeeee.........eeeeeeeee.....eeeeeeeeee.....eeeeeeee........ee..........eeeeee...eeeeeeeee....eeeeeeeee..hhhhhh.eeee.ee..............eeeeee..........eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fjw A 284 DVPENNGILISIKEVINAEFSRDGTIHSSELKGVLELRINDHDLSHSNLKLADSIDVRDKSFQFKTHPNIDKQSFLSTKLISLRDKSKAFPANDQSLGVLRWRKVAPAEDDSLIPLTLTTAVSPSESQQGFDVIIEYESVLETELADVIFTIPVFPQEPVDINTESSTCSDAEVVNmDQEmGTSIKISKIAANDAGALAFTIEAPYEDALYPmTVSFQESTRDKLAKSFTGmAIQSVVmANDHDQELPYDVITSLKSDEYLVQ 546
                                   293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453      |463|      473       483       493  |    503       513 |     523       533       543   
                                                                                                                                                                                                          460-MSE                             496-MSE            515-MSE  |                        
                                                                                                                                                                                                              464-MSE                                                   522-MSE                    


Chain B from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeeeeeeee.....eeeeeeeeeeeeee.hhhhh.eeeee.............ee....hhhhhhhhhee...............eeeeeeeeee.........eeeeeeeee.....eeeeeeeeee.....eeeeeeee........ee..........eeeeee...eeeeeeeee....eeeeeeeee..hhhhhh.eeee.eeee............eeeeee..........eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fjw B 284 DVPENNGILISIKEVINAEFSRDGTIHSSELKGVLELRINDHDLSHSNLKLADSIDVRDKSFQFKTHPNIDKQSFLSTKLISLRDKSKAFPANDQSLGVLRWRKVAPAEDDSLIPLTLTTAVSPSESQQGFDVIIEYESVLETELADVIFTIPVFPQEPVDINTESSTCSDAEVVNmDQEmGTSIKISKIAANDAGALAFTIEAPYEDALYPmTVSFQESTRDKLAKSFTGmAIQSVVmANDHDQELPYDVITSLKSDEYLVQ 546
                                   293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453      |463|      473       483       493  |    503       513 |     523       533       543   
                                                                                                                                                                                                          460-MSE                             496-MSE            515-MSE  |                        
                                                                                                                                                                                                              464-MSE                                                   522-MSE                    


Chain C from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeeeeeeee.....eeeeeeeeeeeeee.hhhhh.eeeee.............ee....hhhhhhhhhee...............eeeeeeeeee.........eeeeeeeee.....eeeeeeeeee.....eeeeeeee........ee..........eeeeee...eeeeeeeee....eeeeeeeee..hhhhhh.eeee.eeee............eeeeee..........eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fjw C 284 DVPENNGILISIKEVINAEFSRDGTIHSSELKGVLELRINDHDLSHSNLKLADSIDVRDKSFQFKTHPNIDKQSFLSTKLISLRDKSKAFPANDQSLGVLRWRKVAPAEDDSLIPLTLTTAVSPSESQQGFDVIIEYESVLETELADVIFTIPVFPQEPVDINTESSTCSDAEVVNmDQEmGTSIKISKIAANDAGALAFTIEAPYEDALYPmTVSFQESTRDKLAKSFTGmAIQSVVmANDHDQELPYDVITSLKSDEYLVQ 546
                                   293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453      |463|      473       483       493  |    503       513 |     523       533       543   
                                                                                                                                                                                                          460-MSE                             496-MSE            515-MSE  |                        
                                                                                                                                                                                                              464-MSE                                                   522-MSE                    


Chain D from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeeeeeeee.....eeeeeeeeeeeeee.hhhhh.eeeee.......hhhhh.ee....hhhhhhhhhee...............eeeeeeeeee.........eeeeeeeee.....eeeeeeeeee.....eeeeeeee........eee........eeeeeee...eeeeeeeee....eeeeeeeee..hhhhhh.eeee.eeee............eeeeee..........eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fjw D 284 DVPENNGILISIKEVINAEFSRDGTIHSSELKGVLELRINDHDLSHSNLKLADSIDVRDKSFQFKTHPNIDKQSFLSTKLISLRDKSKAFPANDQSLGVLRWRKVAPAEDDSLIPLTLTTAVSPSESQQGFDVIIEYESVLETELADVIFTIPVFPQEPVDINTESSTCSDAEVVNmDQEmGTSIKISKIAANDAGALAFTIEAPYEDALYPmTVSFQESTRDKLAKSFTGmAIQSVVmANDHDQELPYDVITSLKSDEYLVQ 546
                                   293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453      |463|      473       483       493  |    503       513 |     523       533       543   
                                                                                                                                                                                                          460-MSE                             496-MSE            515-MSE  |                        
                                                                                                                                                                                                              464-MSE                                                   522-MSE                    


Chain E from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeeeeeeee.....eeeeeeeeeeeeee.hhhhh.eeeee.......hhhhh.ee....hhhhhhhh.ee...............eeeeeeeeee.........eeeeeeeee.....eeeeeeeeee.....eeeeeeee........ee..........eeeee.....eeeeeeee.......eeeeee...hhhhh.ee...eeee............eeeeee..eeeee...eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fjw E 284 DVPENNGILISIKEVINAEFSRDGTIHSSELKGVLELRINDHDLSHSNLKLADSIDVRDKSFQFKTHPNIDKQSFLSTKLISLRDKSKAFPANDQSLGVLRWRKVAPAEDDSLIPLTLTTAVSPSESQQGFDVIIEYESVLETELADVIFTIPVFPQEPVDINTESSTCSDAEVVNmDQEmGTSIKISKIAANDAGALAFTIEAPYEDALYPmTVSFQESTRDKLAKSFTGmAIQSVVmANDHDQELPYDVITSLKSDEYLVQ 546
                                   293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453      |463|      473       483       493  |    503       513 |     523       533       543   
                                                                                                                                                                                                          460-MSE                             496-MSE            515-MSE  |                        
                                                                                                                                                                                                              464-MSE                                                   522-MSE                    


Chain F from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeeeeeeee.....eeeeeeeeeeeeee.hhhhh.eeeee.......hhhhh.ee....hhhhhhhh.ee...............eeeeeeeeee.........eeeeeeeee.....eeeeeeeeee.....eeeeeeee........ee..........eeeee.....eeeeeeee....eeeeeeeee..hhhhhh.eeee...ee............eeeeee..........eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fjw F 284 DVPENNGILISIKEVINAEFSRDGTIHSSELKGVLELRINDHDLSHSNLKLADSIDVRDKSFQFKTHPNIDKQSFLSTKLISLRDKSKAFPANDQSLGVLRWRKVAPAEDDSLIPLTLTTAVSPSESQQGFDVIIEYESVLETELADVIFTIPVFPQEPVDINTESSTCSDAEVVNmDQEmGTSIKISKIAANDAGALAFTIEAPYEDALYPmTVSFQESTRDKLAKSFTGmAIQSVVmANDHDQELPYDVITSLKSDEYLVQ 546
                                   293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453      |463|      473       483       493  |    503       513 |     523       533       543   
                                                                                                                                                                                                          460-MSE                             496-MSE            515-MSE  |                        
                                                                                                                                                                                                              464-MSE                                                   522-MSE                    


Chain G from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeeeeeeee.....eeeeeeeeeeeeee.hhhhh.eeeee.......hhhhh.ee....hhhhhhhhhee...............eeeeeeeeee.........ee..eeeee......eeeee..ee.....ee..eeee........ee..........eeeee.....eeee..ee.......eeeee...hhhhh..eeee.eeee............eeeeee..........eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fjw G 284 DVPENNGILISIKEVINAEFSRDGTIHSSELKGVLELRINDHDLSHSNLKLADSIDVRDKSFQFKTHPNIDKQSFLSTKLISLRDKSKAFPANDQSLGVLRWRKVAPAEDDSLIPLTLTTAVSPSESQQGFDVIIEYESVLETELADVIFTIPVFPQEPVDINTESSTCSDAEVVNmDQEmGTSIKISKIAANDAGALAFTIEAPYEDALYPmTVSFQESTRDKLAKSFTGmAIQSVVmANDHDQELPYDVITSLKSDEYLVQ 546
                                   293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453      |463|      473       483       493  |    503       513 |     523       533       543   
                                                                                                                                                                                                          460-MSE                             496-MSE            515-MSE  |                        
                                                                                                                                                                                                              464-MSE                                                   522-MSE                    


Chain H from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeeeeeeee.....eeeeeeeeeeeeee.hhhhh.eeeee.......hhhhh.ee....hhhhhhh..ee...............eeeeeeeeee.........ee..eeeee.....eeeeee..ee.....ee..eeee....................ee........eeee..ee.......eeeeee..hhhhh..eeee...ee............eeeeee..........eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fjw H 284 DVPENNGILISIKEVINAEFSRDGTIHSSELKGVLELRINDHDLSHSNLKLADSIDVRDKSFQFKTHPNIDKQSFLSTKLISLRDKSKAFPANDQSLGVLRWRKVAPAEDDSLIPLTLTTAVSPSESQQGFDVIIEYESVLETELADVIFTIPVFPQEPVDINTESSTCSDAEVVNmDQEmGTSIKISKIAANDAGALAFTIEAPYEDALYPmTVSFQESTRDKLAKSFTGmAIQSVVmANDHDQELPYDVITSLKSDEYLVQ 546
                                   293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453      |463|      473       483       493  |    503       513 |     523       533       543   
                                                                                                                                                                                                          460-MSE                             496-MSE            515-MSE  |                        
                                                                                                                                                                                                              464-MSE                                                   522-MSE                    


Chain L from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 5fjw L 411 DDWNWEmED 419
                                  |  
                                417-MSE


Chain M from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 5fjw M 411 DDWNWEmED 419
                                  |  
                                417-MSE


Chain N from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 5fjw N 411 DDWNWEmED 419
                                  |  
                                417-MSE


Chain O from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 5fjw O 411 DDWNWEmED 419
                                  |  
                                417-MSE


Chain P from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 5fjw P 411 DDWNWEmED 419
                                  |  
                                417-MSE


Chain Q from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 5fjw Q 411 DDWNWEmED 419
                                  |  
                                417-MSE


Chain R from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 5fjw R 411 DDWNWEmED 419
                                  |  
                                417-MSE


Chain S from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 5fjw S 411 DDWNWEmED 419
                                  |  
                                417-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FJW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FJW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FJW)

(-) Gene Ontology  (22, 29)

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  Cis Peptide Bonds
    Tyr A:494 - Pro A:495   [ RasMol ]  
    Tyr B:494 - Pro B:495   [ RasMol ]  
    Tyr C:494 - Pro C:495   [ RasMol ]  
    Tyr D:494 - Pro D:495   [ RasMol ]  
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  5fjw
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
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  COPD_YEAST | P43621
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  DSL1_YEAST | P53847
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        COPD_YEAST | P43621: 5fjx 5fjz 5fk0
        DSL1_YEAST | P53847: 3etu 3etv 5fjz

(-) Related Entries Specified in the PDB File

5fjx YEAST DELTA-COP-I MU-HOMOLOGY DOMAIN COMPLEXED WITH GCS1 WXXF PEPTIDE
5fjz YEAST DELTA-COP-I MU-HOMOLOGY DOMAIN COMPLEXED WITH DSL1 WXWXV PEPTIDE
5fk0 YEAST DELTA-COP-I MU-HOMOLOGY DOMAIN