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(-) Description

Title :  COPM IN THE CU(II)-BOUND FORM
 
Authors :  S. Zhao, X. Wang, L. Liu
Date :  18 Dec 15  (Deposition) - 07 Sep 16  (Release) - 07 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.01
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Copper Binding Protein, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Zhao, X. Wang, G. Niu, W. Dong, J. Wang, Y. Fang, Y. Lin, L. Liu
Structural Basis For Copper/Silver Binding By The Synechocystis Metallochaperone Copm
Acta Crystallogr. , Sect. D V. 72 997 2016
PubMed: search  |  Reference-DOI: 10.1107/S2059798316011943

(-) Compounds

Molecule 1 - COPM
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PCOPM
    Organism Scientific: SYNECHOCYSTIS SP. PCC 6803
    Organism Taxid: 1148

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1CU2Ligand/IonCOPPER (II) ION
2SO41Ligand/IonSULFATE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1CU-1Ligand/IonCOPPER (II) ION
2SO41Ligand/IonSULFATE ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CU-1Ligand/IonCOPPER (II) ION
2SO4-1Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:56 , ASP A:59 , HIS A:148binding site for residue CU A 201
2AC2SOFTWAREASP A:86 , HIS A:118 , HIS A:121 , HOH A:360binding site for residue CU A 202
3AC3SOFTWAREGLN A:119 , GLY A:120 , HIS A:121 , GLY A:122 , MET A:123 , MET A:124 , ALA A:125 , HOH A:312 , HOH A:323binding site for residue SO4 A 203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FFC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5FFC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FFC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FFC)

(-) Exons   (0, 0)

(no "Exon" information available for 5FFC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:148
                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..................hhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ffc A  42 MQWTDQSFIEMMTPHHQDAIDMAEMALQKAEHPELKKLARNIIRDQEREIKEMKTWYQQWFKRPVPAMMGMHQGHGMMAMDLDALATAQNFDREFIRQMIPHHQMAVMMASNLKTNTERPEMDKLMDDIIRSQSAEIKQMKQWYQNWY 194
                                    51        61        71        81        91       101      |116       126       136       146       156       166       176       186        
                                                                                            108|                                                                                
                                                                                             114                                                                                


Chain B from PDB  Type:PROTEIN  Length:133
                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ffc B  44 WTDQSFIEMMTPHHQDAIDMAEMALQKAEHPELKKLARNIIRDQEREIKEMKTWYQQWFKRPVPMDLDALATAQNFDREFIRQMIPHHQMAVMMASNLKTNTERPEMDKLMDDIIRSQSAEIKQMKQWYQNWY 194
                                    53        63        73        83        93       103   ||  131       141       151       161       171       181       191   
                                                                                         107|                                                                    
                                                                                          126
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FFC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FFC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FFC)

(-) Gene Ontology  (2, 2)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A0A0F6QDN6_9 | A0A0F6QDN6: 5fej 5ffa 5ffb 5ffd 5ffe
        Q6YRW5_SYNY3 | Q6YRW5: 5fej 5ffa 5ffb 5ffd 5ffe

(-) Related Entries Specified in the PDB File

5fej 5FEJ CONTAINS THE SAME PROTEIN
5ffa
5ffb
5ffd
5ffe