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(-) Description

Title :  CRYSTAL STRUCTURE OF A GENOTYPE 1A/3A CHIMERIC HCV NS3/4A PROTEASE IN COMPLEX WITH VANIPREVIR
 
Authors :  D. Soumana, N. K. Yilmaz, A. Ali, K. L. Prachanronarong, C. A. Schiffer
Date :  16 Nov 15  (Deposition) - 30 Nov 16  (Release) - 30 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Vaniprevir, Drug Resistance, Hcv Protease Inhibitor, Genotype 3, Hydrolase, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. I. Soumana, N. Kurt Yilmaz, A. Ali, K. L. Prachanronarong, C. A. Schiffer
Molecular And Dynamic Mechanism Underlying Drug Resistance In Genotype 3 Hepatitis C Ns3/4A Protease.
J. Am. Chem. Soc. V. 138 11850 2016
PubMed-ID: 27512818  |  Reference-DOI: 10.1021/JACS.6B06454
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - NS3 PROTEASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28-A
    Expression System Strain: BL21-DE3
    Expression System Taxid: 469008
    Mutation: YES
    Organism Scientific: HEPATITIS C VIRUS
    Organism Taxid: 11103

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION
2SU31Ligand/Ion(5R,7S,10S)-10-TERT-BUTYL-N-{(1R,2R)-1-[(CYCLOPROPYLSULFONYL)CARBAMOYL]-2-ETHYLCYCLOPROPYL}-15,15-DIMETHYL-3,9,12-TRIOXO-6,7,9,10,11,12,14,15,16,17,18,19-DODECAHYDRO-1H,5H-2,23:5,8-DIMETHANO-4,13,2,8,11-BENZODIOXATRIAZACYCLOHENICOSINE-7(3H)-CARBOXAMIDE
3ZN1Ligand/IonZINC ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:1097 , CYS A:1099 , CYS A:1145 , HIS A:1149binding site for residue ZN A 1201
2AC2SOFTWARELYS A:1080 , SER A:1122 , ARG A:1155 , ILE A:1170 , PRO A:1171 , SER A:1174binding site for residue SO4 A 1202
3AC3SOFTWARETYR A:1006 , GLN A:1008 , TYR A:1056 , HOH A:1312 , HOH A:1325 , HOH A:1334binding site for residue SO4 A 1203
4AC4SOFTWAREGLN A:1041 , PHE A:1043 , HIS A:1057 , GLY A:1058 , ASP A:1079 , ASP A:1081 , LEU A:1135 , LYS A:1136 , GLY A:1137 , SER A:1138 , SER A:1139 , PHE A:1154 , ARG A:1155 , ALA A:1156 , ALA A:1157 , HOH A:1336binding site for residue SU3 A 1204

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5ESB)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5ESB)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5ESB)

(-) Exons   (0, 0)

(no "Exon" information available for 5ESB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:193
                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeee......eeee..hhhhhhhhhhhh.........eeeee....eeeeeee..eeeehhhhhh..............eee....eeeee................eeeee.....eeeeee....eeeeeeeeehhhhh.....eee.....eeeeeeeeeee..eeeeeeeeehhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5esb A  987 KKKGSVVIVGRINLSGDTAYAQQTRGEEGCQETSQTGRDKNQVEGEVQIVSTATQTFLATSINGVLWTVYHGAGTRTIASPKGPVTQMYTNVDKDLVGWQAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSTGSLLSPRPLSYLKGSSGGPLLCPAGHAVGIFRAAVSTRGVAKAVQFIPVESLETTM 1179
                                   996      1006      1016      1026      1036      1046      1056      1066      1076      1086      1096      1106      1116      1126      1136      1146      1156      1166      1176
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5ESB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5ESB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5ESB)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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        C1KIK8_9HEPC | C1KIK8: 5epn 5epy 5eqq 5eqr 5eqs 5etx

(-) Related Entries Specified in the PDB File

5epn 5epy 5eqq 5eqr 5eqs 5etx